Hypoxic microenvironment induced spatial transcriptome changes in pancreatic cancer

by Huizhi Sun, Danfang Zhang, Chongbiao Huang, Yuhong Guo, Zhao Yang, Nan Yao, Xueyi Dong, Runfen Cheng, Nan Zhao, Jie Meng, Baocun Sun, Jihui Hao
Published 2021-05-01

Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues

by Emelie Berglund, Sami Saarenpää, Anders Jemt, Joel Gruselius, Ludvig Larsson, Ludvig Bergenstråhle, Joakim Lundeberg, Stefania Giacomello
Published 2020-04-01

SpatialDWLS: accurate deconvolution of spatial transcriptomic data

by Rui Dong, Guo-Cheng Yuan
Published 2021-05-01

CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis

by Yang Xu, Rachel Patton McCord
Published 2021-08-01

Heterogeneity of Neuroinflammatory Responses in Amyotrophic Lateral Sclerosis: A Challenge or an Opportunity?

by Giada Cipollina, Arash Davari Serej, Gianluca Di Nolfi, Andrea Gazzano, Andrea Marsala, Mauro G. Spatafora, Marco Peviani
Published 2020-10-01

GCNG: graph convolutional networks for inferring gene interaction from spatial transcriptomics data

by Ye Yuan, Ziv Bar-Joseph
Published 2020-12-01

Seamless integration of image and molecular analysis for spatial transcriptomics workflows

by Joseph Bergenstråhle, Ludvig Larsson, Joakim Lundeberg
Published 2020-07-01

SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation

by Joseph Bergenstråhle, Ludvig Bergenstråhle, Joakim Lundeberg
Published 2020-04-01

Editorial: Integration of Multi-Omics Techniques in Cancer

by Geoffroy Andrieux, Geoffroy Andrieux, Sajib Chakraborty
Published 2021-08-01

Spatially Resolved Immunometabolism to Understand Infectious Disease Progression

by Roel Tans, Shoumit Dey, Nidhi Sharma Dey, Grant Calder, Peter O’Toole, Paul M. Kaye, Ron M. A. Heeren
Published 2021-08-01

Identification and transfer of spatial transcriptomics signatures for cancer diagnosis

by Niyaz Yoosuf, José Fernández Navarro, Fredrik Salmén, Patrik L. Ståhl, Carsten O. Daub
Published 2020-01-01

Fusion transcript detection using spatial transcriptomics

by Stefanie Friedrich, Erik L. L. Sonnhammer
Published 2020-08-01

Unraveling Heterogeneity in Transcriptome and Its Regulation Through Single-Cell Multi-Omics Technologies

by Qiao Rui Xing, Qiao Rui Xing, Nadia Omega Cipta, Nadia Omega Cipta, Kiyofumi Hamashima, Yih-Cherng Liou, Cheng Gee Koh, Yuin-Han Loh, Yuin-Han Loh, Yuin-Han Loh, Yuin-Han Loh
Published 2020-07-01

Visualization and Analysis of Gene Expression in Stanford Type A Aortic Dissection Tissue Section by Spatial Transcriptomics

by Yan-Hong Li, Yan-Hong Li, Yan-Hong Li, Ying Cao, Ying Cao, Ying Cao, Ying Cao, Fen Liu, Fen Liu, Qian Zhao, Qian Zhao, Dilare Adi, Dilare Adi, Qiang Huo, Zheng Liu, Jun-Yi Luo, Jun-Yi Luo, Bin-Bin Fang, Bin-Bin Fang, Ting Tian, Xiao-Mei Li, Xiao-Mei Li, Di Liu, Di Liu, Di Liu, Di Liu, Yi-Ning Yang, Yi-Ning Yang, Yi-Ning Yang
Published 2021-06-01

Enhancing Our Understanding of Plant Cell-to-Cell Interactions Using Single-Cell Omics

by Sandra Thibivilliers, Marc Libault
Published 2021-08-01

Spatially resolved transcriptomics reveals plant host responses to pathogens

by Michael Giolai, Walter Verweij, Ashleigh Lister, Darren Heavens, Iain Macaulay, Matthew D. Clark
Published 2019-10-01

Pinpointing Cell Identity in Time and Space

by Anca F. Savulescu, Caron Jacobs, Caron Jacobs, Caron Jacobs, Yutaka Negishi, Laurianne Davignon, Musa M. Mhlanga, Musa M. Mhlanga, Musa M. Mhlanga
Published 2020-08-01

SPARK-X: non-parametric modeling enables scalable and robust detection of spatial expression patterns for large spatial transcriptomic studies

by Jiaqiang Zhu, Shiquan Sun, Xiang Zhou
Published 2021-06-01