Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets

by Emily Berger, Deniz Yorukoglu, Lillian Zhang, Sarah K. Nyquist, Alex K. Shalek, Manolis Kellis, Ibrahim Numanagić, Bonnie Berger
Published 2020-09-01

Comprehensive dissection of PDGF-PDGFR signaling pathways in PDGFR genetically defined cells.

by Erxi Wu, Nathan Palmer, Ze Tian, Annie P Moseman, Michal Galdzicki, Xuetao Wang, Bonnie Berger, Hongbing Zhang, Isaac S Kohane
Published 2008-01-01

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

by Ibrahim Numanagić, Salem Malikić, Michael Ford, Xiang Qin, Lorraine Toji, Milan Radovich, Todd C. Skaar, Victoria M. Pratt, Bonnie Berger, Steve Scherer, S. Cenk Sahinalp
Published 2018-02-01

Reconstructing Roma history from genome-wide data.

by Priya Moorjani, Nick Patterson, Po-Ru Loh, Mark Lipson, Péter Kisfali, Bela I Melegh, Michael Bonin, Ludevít Kádaši, Olaf Rieß, Bonnie Berger, David Reich, Béla Melegh
Published 2013-01-01

Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals.

by Gung-Wei Chirn, Reazur Rahman, Yuliya A Sytnikova, Jessica A Matts, Mei Zeng, Daniel Gerlach, Michael Yu, Bonnie Berger, Mayumi Naramura, Benjamin T Kile, Nelson C Lau
Published 2015-11-01

Genetic determinants of phosphate response in Drosophila.

by Clemens Bergwitz, Mark J Wee, Sumi Sinha, Joanne Huang, Charles DeRobertis, Lawrence B Mensah, Jonathan Cohen, Adam Friedman, Meghana Kulkarni, Yanhui Hu, Arunachalam Vinayagam, Michael Schnall-Levin, Bonnie Berger, Lizabeth A Perkins, Stephanie E Mohr, Norbert Perrimon
Published 2013-01-01

Stitching and sketching large-scale single-cell transcriptomic data

by Hie, Brian.
Published 2019

Biomedical data sharing and analysis at scale : privacy, compaction, and integration

by Cho, Hyunghoon.
Published 2019

Predicting Substrates of [gamma]-secretase in Drosophila/

by Wang, Yuhao, Ph.D. Massachusetts Institute of Technology
Published 2016

Scalable methods for storage, processing and analysis of sequencing datasets

by Yorukoglu, Deniz
Published 2017

Fast and accurate alignment of barcoded reads

by Shajii, Ariya
Published 2018

Statistical prediction schemes for the coiled-coil motif

by Wolf, Ethan
Published 2005

Statistical analysis of protein interaction network topology

by Dong, Yu-An, 1974-
Published 2005

Preserving patient privacy in biomedical data analysis

by Simmons, Sean Kenneth
Published 2016

Incorporating diverse data to improve genetic network alignment with IsoRank

by Eisner, Eric David
Published 2013

Web servers, databases, and algorithms for the analysis of protein interaction networks

by Park, Daniel K. (Daniel Kyu)
Published 2013

Large scale disease prediction

by Schmid, Patrick R. (Patrick Raphael)
Published 2008

Localized methods for protein interaction prediction

by Pulim, Vinay, 1976-
Published 2009

RNA : algorithms, evolution and design

by Schnall-Levin, Michael (Michael Benjamin)
Published 2011

Multicoil-HMM : improved prediction of coiled-coil oligomer state from sequence

by Trigg, Jason (Jason A.)
Published 2011