A multi-labeled tree dissimilarity measure for comparing “clonal trees” of tumor progression

by Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, S. Cenk Sahinalp
Published 2019-07-01

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

by Salem Malikic, Katharina Jahn, Jack Kuipers, S. Cenk Sahinalp, Niko Beerenwinkel
Published 2019-06-01

Tumor Phylogeny Topology Inference via Deep Learning

by Erfan Sadeqi Azer, Mohammad Haghir Ebrahimabadi, Salem Malikić, Roni Khardon, S. Cenk Sahinalp
Published 2020-11-01

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

by Ibrahim Numanagić, Salem Malikić, Michael Ford, Xiang Qin, Lorraine Toji, Milan Radovich, Todd C. Skaar, Victoria M. Pratt, Bonnie Berger, Steve Scherer, S. Cenk Sahinalp
Published 2018-02-01