A role for the bacterial GATC methylome in antibiotic stress survival

by Ross, Christian A, Belenky, Peter, Li, Hu, Cohen, Nadia, Jain, Saloni R., Gutierrez, Arnaud, Collins, James J., Shapiro, Rebecca
Published 2017

A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria

by Stokes, Jonathan, Gutierrez, Arnaud, Lopatkin, Allison J., Andrews, Ian W., French, Shawn, Matic, Ivan, Brown, Eric D., Collins, James J.
Published 2020

CRISPR Guide RNA Cloning for Mammalian Systems

by Nageshwaran, Sathiji, Chavez, Alejandro, Cher Yeo, Nan, Guo, Xiaoge, Lance-Byrne, Alissa, Tung, Angela, Collins, James J., Church, George M.
Published 2020

Roles for the transcription elongation factor NusA in both DNA repair and damage tolerance pathways in Escherichia coli

by Cohen, Susan E., Lewis, Cindi A., Walker, Graham C., Mooney, Rachel A., Kohanski, Michael A., Collins, James J., Landick, Robert
Published 2014

A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers

by Donghia, Nina, Ananthakrishnan, Ashwin, Takahashi, Melissa Kimie, Tan, Xiao, Dy, Aaron James, Braff, Dana, Akana, Reid T., Furuta, Yoshikazu, Collins, James J.
Published 2018

Creating Single-Copy Genetic Circuits

by Choi, Kyeong Rok, Way, Jeffrey C., Silver, Pamela A., Lee, Jeongwook, Gyoergy, Andras, Cameron, David, Pyenson, Nora, Del Vecchio, Domitilla, Collins, James J.
Published 2018

Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks

by Yeung, Enoch, Martin, Kyle B., Ng, Andrew H., Beck, James L., Murray, Richard M., Dy, Aaron James, Del Vecchio, Domitilla, Collins, James J.
Published 2018

Antibiotic efficacy is linked to bacterial cellular respiration

by Belenky, Peter, Gutierrez, Arnaud, Schwarz, Eric G., Dwyer, Daniel J., Khalil, Ahmad S., Collins, James J., Porter, Caroline, Yang, Jason Hung-Ying, Lobritz, Michael Andrew
Published 2016

Comprehensive Mapping of Pluripotent Stem Cell Metabolism Using Dynamic Genome-Scale Network Modeling

by Chandrasekaran, Sriram, Zhang, Jin, Sun, Zhen, Zhang, Li, Ross, Christian A., Huang, Yu-Chung, Asara, John M., Li, Hu, Daley, George Q., Collins, James J.
Published 2018

Precise Cas9 targeting enables genomic mutation prevention

by Chavez, Alejandro, Pruitt, Benjamin W., Tuttle, Marcelle, Cecchi, Ryan J., Winston, Jordan, Turczyk, Brian M., Tung, Michael, Collins, James J., Church, George M, Shapiro, Rebecca
Published 2018

Creating CRISPR-responsive smart materials for diagnostics and programmable cargo release

by Gayet, Raphael V., de Puig Guixe, Helena, English, Max A., Soenksen Martinez, Luis Ruben, Nguyen, Peter Q., Mao, Angelo S., Angenent-Mari, Nicolaas M., Collins, James J.
Published 2021

Transcriptome Analysis Identifies Regulators of Hematopoietic Stem and Progenitor Cells

by Gazit, Roi, Garrison, Brian S, Rao, Tata Nageswara, Shay, Tal, Costello, James, Ericson, Jeff, Kim, Francis, Collins, James J., Regev, Aviv, Wagers, Amy J, Rossi, Derrick J
Published 2014

Carbon Sources Tune Antibiotic Susceptibility in Pseudomonas aeruginosa via Tricarboxylic Acid Cycle Control

by Belenky, Peter, Park, Jihye, Kim, Sun H., Moskowitz, Samuel M., Meylan, Sylvain, Porter, Caroline, Yang, Jason Hung-Ying, Gutierrez, Arnaud, Lobritz, Michael Andrew, Collins, James J.
Published 2018

Programmable CRISPR-responsive smart materials

by English, Max A., Soenksen Martinez, Luis Ruben, Gayet, Raphael V., de Puig Guixe, Helena, Angenent-Mari, Nicolaas M., Mao, Angelo S., Nguyen, Peter Q., Collins, James J.
Published 2020

Bactericidal Antibiotics Induce Toxic Metabolic Perturbations that Lead to Cellular Damage

by Belenky, Peter, Ye, Jonathan D, Cohen, Nadia R, Ferrante, Thomas, Jain, Saloni, Korry, Benjamin J, Schwarz, Eric G, Walker, Graham C, Collins, James J., Porter, Caroline, Lobritz, Michael
Published 2016

Reconstruction of complex single-cell trajectories using CellRouter

by Lummertz da Rocha, Edroaldo, Rowe, R. Grant, Lundin, Vanessa, Malleshaiah, Mohan, Jha, Deepak Kumar, Rambo, Carlos R., Li, Hu, North, Trista E., Collins, James J., Daley, George Q.
Published 2018

Lethality of MalE-LacZ hybrid protein shares mechanistic attributes with oxidative component of antibiotic lethality

by Liu, Xiaobo, Andreescu, Silvana, Takahashi, Noriko, Gruber, Charley C, Yang, Jason Hung-Ying, Braff, Dana, Yashaswini, Chittampalli N., Bhubhanil, Sakkarin, Furuta, Yoshikazu, Collins, James J., Walker, Graham C.
Published 2018

RNAi Reveals Phase-Specific Global Regulators of Human Somatic Cell Reprogramming

by Toh, Cheng-Xu Delon, Chan, Jun-Wei, Chong, Zheng-Shan, Wang, Hao Fei, Guo, Hong Chao, Satapathy, Sandeep, Ma, Dongrui, Goh, Germaine Yen Lin, Khattar, Ekta, Tergaonkar, Vinay, Chang, Young-Tae, Collins, James J, Daley, George Q, Wee, Keng Boon, Farran, Chadi A. EL, Li, Hu, Lim, Yoon-Pin, Bard, Frederic A, Loh, Yuin-Han, Collins, James J., Yang, Lin, S.M. Massachusetts Institute of Technology
Published 2016

A CRISPR-based assay for the detection of opportunistic infections post-transplantation and for the monitoring of transplant rejection

by Kaminski, Michael M., Alcantar, Miguel A., Lape, Isadora T., Greensmith, Robert, Huske, Allison C., Valeri, Jacqueline A., Marty, Francisco M., Klämbt, Verena, Azzi, Jamil, Akalin, Enver, Riella, Leonardo V., Collins, James J.
Published 2020