Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups.

by Dongying Wu, Guillaume Jospin, Jonathan A Eisen
Published 2013-01-01

The bacterial communities of Drosophila suzukii collected from undamaged cherries

by James Angus Chandler, Pamela M. James, Guillaume Jospin, Jenna M. Lang
Published 2014-07-01

Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections.

by Joe Ibrahim, Jonathan A Eisen, Guillaume Jospin, David A Coil, Georges Khazen, Sima Tokajian
Published 2016-01-01

Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum

by Katherine E. Dahlhausen, Guillaume Jospin, David A. Coil, Jonathan A. Eisen, Laetitia G.E. Wilkins
Published 2020-10-01

PhyloSift: phylogenetic analysis of genomes and metagenomes

by Aaron E. Darling, Guillaume Jospin, Eric Lowe, Frederick A. Matsen IV, Holly M. Bik, Jonathan A. Eisen
Published 2014-01-01

Swabs to genomes: a comprehensive workflow

by Madison I. Dunitz, Jenna M. Lang, Guillaume Jospin, Aaron E. Darling, Jonathan A. Eisen, David A. Coil
Published 2015-05-01

Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of Shigella sonnei with either Increased Virulence or Fluoroquinolone Resistance

by Varvara K. Kozyreva, Guillaume Jospin, Alexander L. Greninger, James P. Watt, Jonathan A. Eisen, Vishnu Chaturvedi, Melanie Blokesch
Published 2016-12-01

Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secretion system and four novel putative type 1 secretion systems throughout the Legionella genus.

by Connor L Brown, Emily Garner, Guillaume Jospin, David A Coil, David O Schwake, Jonathan A Eisen, Biswarup Mukhopadhyay, Amy J Pruden
Published 2020-01-01

Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment.

by David A Coil, Guillaume Jospin, Aaron E Darling, Corrin Wallis, Ian J Davis, Stephen Harris, Jonathan A Eisen, Lucy J Holcombe, Ciaran O'Flynn
Published 2019-01-01

Bacterial communities associated with cell phones and shoes

by David A. Coil, Russell Y. Neches, Jenna M. Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Published 2020-06-01

Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling.

by Mei S Yamaguchi, Holly H Ganz, Adrienne W Cho, Thant H Zaw, Guillaume Jospin, Mitchell M McCartney, Cristina E Davis, Jonathan A Eisen, David A Coil
Published 2019-01-01

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016

by Emily Garner, Connor L. Brown, David Otto Schwake, William J. Rhoads, Gustavo Arango-Argoty, Liqing Zhang, Guillaume Jospin, David A. Coil, Jonathan A. Eisen, Marc A. Edwards, Amy Pruden
Published 2019-11-01

Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria

by Holly M. Bik, Alexandra Alexiev, Sabreen K. Aulakh, Lakshmi Bharadwaj, Jennifer Flanagan, John M. Haggerty, Sarah M. Hird, Guillaume Jospin, Jenna M. Lang, Laura A. Sauder, Josh D. Neufeld, Andrew Shaver, Akshay Sethi, Jonathan A. Eisen, David A. Coil
Published 2019-02-01

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

by Loes M. Olde Loohuis, Serghei Mangul, Anil P. S. Ori, Guillaume Jospin, David Koslicki, Harry Taegyun Yang, Timothy Wu, Marco P. Boks, Catherine Lomen-Hoerth, Martina Wiedau-Pazos, Rita M. Cantor, Willem M. de Vos, René S. Kahn, Eleazar Eskin, Roel A. Ophoff
Published 2018-05-01

Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota.

by Allen Van Deynze, Pablo Zamora, Pierre-Marc Delaux, Cristobal Heitmann, Dhileepkumar Jayaraman, Shanmugam Rajasekar, Danielle Graham, Junko Maeda, Donald Gibson, Kevin D Schwartz, Alison M Berry, Srijak Bhatnagar, Guillaume Jospin, Aaron Darling, Richard Jeannotte, Javier Lopez, Bart C Weimer, Jonathan A Eisen, Howard-Yana Shapiro, Jean-Michel Ané, Alan B Bennett
Published 2018-08-01