Biological Machine Learning Combined with <em>Campylobacter</em> Population Genomics Reveals Virulence Gene Allelic Variants Cause Disease

by DJ Darwin R. Bandoy, Bart C. Weimer
Published 2020-04-01

Analysis of SARS-CoV-2 genomic epidemiology reveals disease transmission coupled to variant emergence and allelic variation

by D J Darwin R. Bandoy, Bart C. Weimer
Published 2021-04-01

Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection

by Poyin Chen, Taylor Reiter, Bihua Huang, Nguyet Kong, Bart C. Weimer
Published 2017-12-01

Identification of Nitrogen Fixation Genes in <i>Lactococcus </i>Isolated from Maize Using Population Genomics and Machine Learning

by Shawn M. Higdon, Bihua C. Huang, Alan B. Bennett, Bart C. Weimer
Published 2020-12-01

SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree

by John R. Stevens, Todd R. Jones, Michael Lefevre, Balasubramanian Ganesan, Bart C. Weimer
Published 2017-01-01

Whole Cell Cross-Linking to Discover Host–Microbe Protein Cognate Receptor/Ligand Pairs

by Bart C. Weimer, Poyin Chen, Prerak T. Desai, Prerak T. Desai, Dong Chen, Jigna Shah, Jigna Shah
Published 2018-07-01

Diazotrophic bacteria from maize exhibit multifaceted plant growth promotion traits in multiple hosts.

by Shawn M Higdon, Tania Pozzo, Emily J Tibbett, Colleen Chiu, Richard Jeannotte, Bart C Weimer, Alan B Bennett
Published 2020-01-01

Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature.

by Douglas M Heithoff, William R Shimp, John K House, Yi Xie, Bart C Weimer, Robert L Sinsheimer, Michael J Mahan
Published 2012-01-01

Diazotrophic bacteria from maize exhibit multifaceted plant growth promotion traits in multiple hosts

by Shawn M. Higdon, Tania Pozzo, Emily J. Tibbett, Colleen Chiu, Richard Jeannotte, Bart C. Weimer, Alan B. Bennett, Jen-Tsung Chen
Published 2020-01-01

Analyses of publicly available Hungatella hathewayi genomes revealed genetic distances indicating they belong to more than one species

by Laura E. Hernández-Juárez, Margarita Camorlinga, Alfonso Méndez-Tenorio, Judith Flores Calderón, B. Carol Huang, DJ Darwin R. Bandoy, Bart C. Weimer, Javier Torres
Published 2021-01-01

Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage.

by Shawn M Higdon, Tania Pozzo, Nguyet Kong, Bihua C Huang, Mai Lee Yang, Richard Jeannotte, C Titus Brown, Alan B Bennett, Bart C Weimer
Published 2020-01-01

Functional biogeography as evidence of gene transfer in hypersaline microbial communities.

by J Jacob Parnell, Giovanni Rompato, Leigh C Latta, Michael E Pfrender, Joy D Van Nostrand, Zhili He, Jizhong Zhou, Gary Andersen, Patti Champine, Balasubramanian Ganesan, Bart C Weimer
Published 2010-01-01

Whole Genome Sequencing of Pediatric Klebsiella pneumoniae Strains Reveals Important Insights Into Their Virulence-Associated Traits

by Mauricio Flores-Valdez, Mauricio Flores-Valdez, Miguel A. Ares, Miguel A. Ares, Roberto Rosales-Reyes, Javier Torres, Jorge A. Girón, Bart C. Weimer, Alfonso Mendez-Tenorio, Miguel A. De la Cruz
Published 2021-08-01

Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages

by Xiangyu Deng, Prerak T. Desai, Henk C. den Bakker, Matthew Mikoleit, Beth Tolar, Eija Trees, Rene S. Hendriksen, Jonathan G. Frye, Steffen Porwollik, Bart C. Weimer, Martin Wiedmann, George M. Weinstock, Patricia I. Fields, Michael McClelland
Published 2014-09-01

Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains

by Jenny L. Draper, Lori M. Hansen, David L. Bernick, Samar Abedrabbo, Jason G. Underwood, Nguyet Kong, Bihua C. Huang, Allison M. Weis, Bart C. Weimer, Arnoud H. M. van Vliet, Nader Pourmand, Jay V. Solnick, Kevin Karplus, Karen M. Ottemann, Claire M. Fraser
Published 2017-02-01

Monitoring the microbiome for food safety and quality using deep shotgun sequencing

by Kristen L. Beck, Niina Haiminen, David Chambliss, Stefan Edlund, Mark Kunitomi, B. Carol Huang, Nguyet Kong, Balasubramanian Ganesan, Robert Baker, Peter Markwell, Ban Kawas, Matthew Davis, Robert J. Prill, Harsha Krishnareddy, Ed Seabolt, Carl H. Marlowe, Sophie Pierre, André Quintanar, Laxmi Parida, Geraud Dubois, James Kaufman, Bart C. Weimer
Published 2021-02-01

Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota.

by Allen Van Deynze, Pablo Zamora, Pierre-Marc Delaux, Cristobal Heitmann, Dhileepkumar Jayaraman, Shanmugam Rajasekar, Danielle Graham, Junko Maeda, Donald Gibson, Kevin D Schwartz, Alison M Berry, Srijak Bhatnagar, Guillaume Jospin, Aaron Darling, Richard Jeannotte, Javier Lopez, Bart C Weimer, Jonathan A Eisen, Howard-Yana Shapiro, Jean-Michel Ané, Alan B Bennett
Published 2018-08-01

A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis

by Jean-Guillaume Emond-Rheault, Julie Jeukens, Luca Freschi, Irena Kukavica-Ibrulj, Brian Boyle, Marie-Josée Dupont, Anna Colavecchio, Virginie Barrere, Brigitte Cadieux, Gitanjali Arya, Sadjia Bekal, Chrystal Berry, Elton Burnett, Camille Cavestri, Travis K. Chapin, Alanna Crouse, France Daigle, Michelle D. Danyluk, Pascal Delaquis, Ken Dewar, Ken Dewar, Florence Doualla-Bell, Ismail Fliss, Karen Fong, Eric Fournier, Eelco Franz, Rafael Garduno, Alexander Gill, Samantha Gruenheid, Linda Harris, Carol B. Huang, Hongsheng Huang, Roger Johnson, Yann Joly, Maud Kerhoas, Nguyet Kong, Gisèle Lapointe, Line Larivière, Stéphanie Loignon, Danielle Malo, Sylvain Moineau, Walid Mottawea, Walid Mottawea, Kakali Mukhopadhyay, Céline Nadon, John Nash, Ida Ngueng Feze, Dele Ogunremi, Ann Perets, Ana V. Pilar, Aleisha R. Reimer, James Robertson, John Rohde, Kenneth E. Sanderson, Lingqiao Song, Roger Stephan, Sandeep Tamber, Paul Thomassin, Denise Tremblay, Valentine Usongo, Caroline Vincent, Siyun Wang, Joel T. Weadge, Martin Wiedmann, Lucas Wijnands, Emily D. Wilson, Thomas Wittum, Catherine Yoshida, Khadija Youfsi, Lei Zhu, Bart C. Weimer, Lawrence Goodridge, Roger C. Levesque
Published 2017-06-01