Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab

by Michael R. Crusoe, C. Titus Brown
Published 2016-11-01

Channeling Community Contributions to Scientific Software: A Sprint Experience

by Michael R Crusoe, C. Titus Brown
Published 2016-07-01

Kevlar: A Mapping-Free Framework for Accurate Discovery of De Novo Variants

by Daniel S. Standage, C. Titus Brown, Fereydoun Hormozdiari
Published 2019-08-01

MQF and buffered MQF: quotient filters for efficient storage of k-mers with their counts and metadata

by Moustafa Shokrof, C. Titus Brown, Tamer A. Mansour
Published 2021-02-01

Differentially-Expressed Pseudogenes in HIV-1 Infection

by Aditi Gupta, C. Titus Brown, Yong-Hui Zheng, Christoph Adami
Published 2015-09-01

Draft genome of tule elk Cervus canadensis nannodes [version 2; referees: 2 approved]

by Jessica E. Mizzi, Zachary T. Lounsberry, C. Titus Brown, Benjamin N. Sacks
Published 2017-12-01

533 Cross-species immunogenomic analysis identifies pathways of canine natural killer cell response to cytokine therapy, and reveals convergence of activated dog and human natural...

by Taylor Reiter, Daniel York, Mio Yanagisawa, Rachel Brady, C Titus Brown
Published 2020-11-01

Large-scale sequence comparisons with sourmash [version 1; peer review: 2 approved]

by N. Tessa Pierce, Luiz Irber, Taylor Reiter, Phillip Brooks, C. Titus Brown
Published 2019-07-01

These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure.

by Qingpeng Zhang, Jason Pell, Rosangela Canino-Koning, Adina Chuang Howe, C Titus Brown
Published 2014-01-01

Editorial: Curriculum Applications in Microbiology: Bioinformatics in the Classroom

by Melanie Crystal Melendrez, Sophie Shaw, C. Titus Brown, Brad W. Goodner, Christopher Kvaal
Published 2021-07-01

Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity

by C. Titus Brown, Dominik Moritz, Michael P. O’Brien, Felix Reidl, Taylor Reiter, Blair D. Sullivan
Published 2020-07-01

Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians

by Alberto Stolfi, Elijah K Lowe, Claudia Racioppi, Filomena Ristoratore, C Titus Brown, Billie J Swalla, Lionel Christiaen
Published 2014-09-01

Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host.

by John P Jerome, Julia A Bell, Anne E Plovanich-Jones, Jeffrey E Barrick, C Titus Brown, Linda S Mansfield
Published 2011-01-01

Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes

by Jiarong Guo, John F. Quensen, Yanni Sun, Qiong Wang, C. Titus Brown, James R. Cole, James M. Tiedje
Published 2019-10-01

Evolutionary loss of melanogenesis in the tunicate Molgula occulta

by Claudia Racioppi, Maria Carmen Valoroso, Ugo Coppola, Elijah K. Lowe, C. Titus Brown, Billie J. Swalla, Lionel Christiaen, Alberto Stolfi, Filomena Ristoratore
Published 2017-07-01

The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis

by Matthew R. Olm, Cristina N. Butterfield, Alex Copeland, T. Christian Boles, Brian C. Thomas, Jillian F. Banfield, C. Titus Brown, Dianne K. Newman
Published 2017-02-01

Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage.

by Shawn M Higdon, Tania Pozzo, Nguyet Kong, Bihua C Huang, Mai Lee Yang, Richard Jeannotte, C Titus Brown, Alan B Bennett, Bart C Weimer
Published 2020-01-01

Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

by Tamer A. Mansour, Mohamed R. Habib, Laura C. Vicente Rodríguez, Anthony Hernández Vázquez, Julián Maldonado Alers, Alfredo Ghezzi, Roger P. Croll, C. Titus Brown, Mark W. Miller
Published 2017-12-01

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.

by James A Stapleton, Jeongwoon Kim, John P Hamilton, Ming Wu, Luiz C Irber, Rohan Maddamsetti, Bryan Briney, Linsey Newton, Dennis R Burton, C Titus Brown, Christina Chan, C Robin Buell, Timothy A Whitehead
Published 2016-01-01

Best practices for scientific computing.

by Greg Wilson, D A Aruliah, C Titus Brown, Neil P Chue Hong, Matt Davis, Richard T Guy, Steven H D Haddock, Kathryn D Huff, Ian M Mitchell, Mark D Plumbley, Ben Waugh, Ethan P White, Paul Wilson
Published 2014-01-01