An integrative functional genomics framework for effective identification of novel regulatory variants in genome–phenome studies

by Junfei Zhao, Feixiong Cheng, Peilin Jia, Nancy Cox, Joshua C. Denny, Zhongming Zhao
Published 2018-01-01

Deep generative neural network for accurate drug response imputation

by Peilin Jia, Ruifeng Hu, Guangsheng Pei, Yulin Dai, Yin-Ying Wang, Zhongming Zhao
Published 2021-03-01

Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity

by Teng Liu, Peilin Jia, Bingliang Fang, Bingliang Fang, Zhongming Zhao, Zhongming Zhao, Zhongming Zhao
Published 2020-10-01

Consensus rules in variant detection from next-generation sequencing data.

by Peilin Jia, Fei Li, Jufeng Xia, Haiquan Chen, Hongbin Ji, William Pao, Zhongming Zhao
Published 2012-01-01

Weak sharing of genetic association signals in three lung cancer subtypes: evidence at the SNP, gene, regulation, and pathway levels

by Timothy D. O’Brien, Peilin Jia, Neil E. Caporaso, Maria Teresa Landi, Zhongming Zhao
Published 2018-02-01

Network-based identification of critical regulators as putative drivers of human cleft lip

by Aimin Li, Guimin Qin, Akiko Suzuki, Mona Gajera, Junichi Iwata, Peilin Jia, Zhongming Zhao
Published 2019-01-01

Multi-dimensional prioritization of dental caries candidate genes and its enriched dense network modules.

by Quan Wang, Peilin Jia, Karen T Cuenco, Eleanor Feingold, Mary L Marazita, Lily Wang, Zhongming Zhao
Published 2013-01-01

A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types.

by Feixiong Cheng, Chuang Liu, Chen-Ching Lin, Junfei Zhao, Peilin Jia, Wen-Hsiung Li, Zhongming Zhao
Published 2015-09-01

Association signals unveiled by a comprehensive gene set enrichment analysis of dental caries genome-wide association studies.

by Quan Wang, Peilin Jia, Karen T Cuenco, Zhen Zeng, Eleanor Feingold, Mary L Marazita, Lily Wang, Zhongming Zhao
Published 2013-01-01

Deciphering the unique microRNA signature in human esophageal adenocarcinoma.

by Rama Saad, Zheng Chen, Shoumin Zhu, Peilin Jia, Zhongming Zhao, M Kay Washington, Abbes Belkhiri, Wael El-Rifai
Published 2013-01-01

Network-assisted investigation of combined causal signals from genome-wide association studies in schizophrenia.

by Peilin Jia, Lily Wang, Ayman H Fanous, Carlos N Pato, Todd L Edwards, International Schizophrenia Consortium, Zhongming Zhao
Published 2012-01-01

MicroRNA-655-3p and microRNA-497-5p inhibit cell proliferation in cultured human lip cells through the regulation of genes related to human cleft lip

by Mona Gajera, Neha Desai, Akiko Suzuki, Aimin Li, Musi Zhang, Goo Jun, Peilin Jia, Zhongming Zhao, Junichi Iwata
Published 2019-05-01

Multi-level transcriptome sequencing identifies COL1A1 as a candidate marker in human heart failure progression

by Xiumeng Hua, Yin-Ying Wang, Peilin Jia, Qing Xiong, Yiqing Hu, Yuan Chang, Songqing Lai, Yong Xu, Zhongming Zhao, Jiangping Song
Published 2020-01-01

Schizophrenia gene networks and pathways and their applications for novel candidate gene selection.

by Jingchun Sun, Peilin Jia, Ayman H Fanous, Edwin van den Oord, Xiangning Chen, Brien P Riley, Richard L Amdur, Kenneth S Kendler, Zhongming Zhao
Published 2010-06-01

Clonal architectures predict clinical outcome in clear cell renal cell carcinoma

by Yi Huang, Jiayin Wang, Peilin Jia, Xiangchun Li, Guangsheng Pei, Changxi Wang, Xiaodong Fang, Zhongming Zhao, Zhiming Cai, Xin Yi, Song Wu, Baifeng Zhang
Published 2019-03-01

MicroRNA-124-3p suppresses mouse lip mesenchymal cell proliferation through the regulation of genes associated with cleft lip in the mouse

by Akiko Suzuki, Hiroki Yoshioka, Dima Summakia, Neha G. Desai, Goo Jun, Peilin Jia, David S. Loose, Kenichi Ogata, Mona V. Gajera, Zhongming Zhao, Junichi Iwata
Published 2019-11-01

Unique protein expression signatures of survival time in kidney renal clear cell carcinoma through a pan-cancer screening

by Guangchun Han, Wei Zhao, Xiaofeng Song, Patrick Kwok-Shing Ng, Jose A. Karam, Eric Jonasch, Gordon B. Mills, Zhongming Zhao, Zhiyong Ding, Peilin Jia
Published 2017-10-01

Adenoma formation following limited ablation of p120-catenin in the mouse intestine.

by Whitney G Smalley-Freed, Andrey Efimov, Sarah P Short, Sarah P Short, Peilin Jia, Zhongming Zhao, M Kay Washington, Sylvie Robine, Robert J Coffey, Albert B Reynolds
Published 2011-01-01

PMN-MDSCs Enhance CTC Metastatic Properties through Reciprocal Interactions via ROS/Notch/Nodal Signaling

by Marc L. Sprouse, Thomas Welte, Debasish Boral, Haowen N. Liu, Wei Yin, Monika Vishnoi, Debalina Goswami-Sewell, Lili Li, Guangsheng Pei, Peilin Jia, Isabella C. Glitza-Oliva, Dario Marchetti
Published 2019-04-01

Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action.

by Jingchun Sun, Min Zhao, Peilin Jia, Lily Wang, Yonghui Wu, Carissa Iverson, Yubo Zhou, Erica Bowton, Dan M Roden, Joshua C Denny, Melinda C Aldrich, Hua Xu, Zhongming Zhao
Published 2015-06-01