Combining Pathway Identification and Breast Cancer Survival Prediction via Screening-Network Methods

by Antonella Iuliano, Antonella Iuliano, Annalisa Occhipinti, Claudia Angelini, Italia De Feis, Pietro Liò
Published 2018-06-01

Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis

by Emmanouil I. Athanasiadis, Jan G. Botthof, Helena Andres, Lauren Ferreira, Pietro Lio, Ana Cvejic
Published 2017-12-01

Prediction by graph theoretic measures of structural effects in proteins arising from non-synonymous single nucleotide polymorphisms.

by Tammy M K Cheng, Yu-En Lu, Michele Vendruscolo, Pietro Lio', Tom L Blundell
Published 2008-07-01

Predicting factors for survival of breast cancer patients using machine learning techniques

by Mogana Darshini Ganggayah, Nur Aishah Taib, Yip Cheng Har, Pietro Lio, Sarinder Kaur Dhillon
Published 2019-03-01

CiliateGEM: an open-project and a tool for predictions of ciliate metabolic variations and experimental condition design

by Alessio Mancini, Filmon Eyassu, Maxwell Conway, Annalisa Occhipinti, Pietro Liò, Claudio Angione, Sandra Pucciarelli
Published 2018-11-01

iBitter-Fuse: A Novel Sequence-Based Bitter Peptide Predictor by Fusing Multi-View Features

by Phasit Charoenkwan, Chanin Nantasenamat, Md. Mehedi Hasan, Mohammad Ali Moni, Pietro Lio’, Watshara Shoombuatong
Published 2021-08-01

Social dynamics modeling of chrono-nutrition.

by Alessandro Di Stefano, Marialisa Scatà, Supreeta Vijayakumar, Claudio Angione, Aurelio La Corte, Pietro Liò
Published 2019-01-01

Deep Learning Enables Fast and Accurate Imputation of Gene Expression

by Ramon Viñas, Tiago Azevedo, Eric R. Gamazon, Eric R. Gamazon, Eric R. Gamazon, Pietro Liò
Published 2021-04-01

Quantifying the Role of Homophily in Human Cooperation Using Multiplex Evolutionary Game Theory.

by Alessandro Di Stefano, Marialisa Scatà, Aurelio La Corte, Pietro Liò, Emanuele Catania, Ermanno Guardo, Salvatore Pagano
Published 2015-01-01

STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow

by Igor Saggese, Elisa Bona, Max Conway, Francesco Favero, Marco Ladetto, Pietro Liò, Giovanni Manzini, Flavio Mignone
Published 2018-07-01

Global gene expression profiling and senescence biomarker analysis of hESC exposed to H2O2 induced non-cytotoxic oxidative stress

by Maria Barandalla, Hui Shi, Hui Xiao, Silvia Colleoni, Cesare Galli, Pietro Lio, Matthew Trotter, Giovanna Lazzari
Published 2017-07-01

GenHap: a novel computational method based on genetic algorithms for haplotype assembly

by Andrea Tangherloni, Simone Spolaor, Leonardo Rundo, Marco S. Nobile, Paolo Cazzaniga, Giancarlo Mauri, Pietro Liò, Ivan Merelli, Daniela Besozzi
Published 2019-04-01

Variational Autoencoders for Cancer Data Integration: Design Principles and Computational Practice

by Nikola Simidjievski, Cristian Bodnar, Ifrah Tariq, Ifrah Tariq, Paul Scherer, Helena Andres Terre, Zohreh Shams, Mateja Jamnik, Pietro Liò
Published 2019-12-01

Integration of Machine Learning Methods to Dissect Genetically Imputed Transcriptomic Profiles in Alzheimer’s Disease

by Carlo Maj, Tiago Azevedo, Valentina Giansanti, Oleg Borisov, Giovanna Maria Dimitri, Simeon Spasov, Alzheimer’s Disease Neuroimaging Initiative, Pietro Lió, Ivan Merelli
Published 2019-09-01

A multiplex network approach for the analysis of intracranial pressure and heart rate data in traumatic brain injured patients

by Giovanna Maria Dimitri, Shruti Agrawal, Adam Young, Joseph Donnelly, Xiuyun Liu, Peter Smielewski, Peter Hutchinson, Marek Czosnyka, Pietro Lió, Christina Haubrich
Published 2017-08-01

Machine Learning-Based Models for Early Stage Detection of Autism Spectrum Disorders

by Tania Akter, Md. Shahriare Satu, Md. Imran Khan, Mohammad Hanif Ali, Shahadat Uddin, Pietro Lio, Julian M. W. Quinn, Mohammad Ali Moni
Published 2019-01-01

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

by Olusegun Oshota, Max Conway, Maria Fookes, Fernanda Schreiber, Roy R Chaudhuri, Lu Yu, Fiona J E Morgan, Simon Clare, Jyoti Choudhary, Nicholas R Thomson, Pietro Lio, Duncan J Maskell, Pietro Mastroeni, Andrew J Grant
Published 2017-01-01

Emotion Recognition From EEG Signal Focusing on Deep Learning and Shallow Learning Techniques

by Md. Rabiul Islam, Mohammad Ali Moni, Md. Milon Islam, Md. Rashed-Al-Mahfuz, Md. Saiful Islam, Md. Kamrul Hasan, Md. Sabir Hossain, Mohiuddin Ahmad, Shahadat Uddin, Akm Azad, Salem A. Alyami, Md. Atiqur Rahman Ahad, Pietro Lio
Published 2021-01-01

Pathway-based subnetworks enable cross-disease biomarker discovery

by Syed Haider, Cindy Q. Yao, Vicky S. Sabine, Michal Grzadkowski, Vincent Stimper, Maud H. W. Starmans, Jianxin Wang, Francis Nguyen, Nathalie C. Moon, Xihui Lin, Camilla Drake, Cheryl A. Crozier, Cassandra L. Brookes, Cornelis J. H. van de Velde, Annette Hasenburg, Dirk G. Kieback, Christos J. Markopoulos, Luc Y. Dirix, Caroline Seynaeve, Daniel W. Rea, Arek Kasprzyk, Philippe Lambin, Pietro Lio’, John M. S. Bartlett, Paul C. Boutros
Published 2018-11-01