Inferring Correlation Networks from Genomic Survey Data

by Friedman, Jonathan, Alm, Eric J.
Published 2013

A practical guide to methods controlling false discoveries in computational biology

by Duvallet, Claire, Alm, Eric J
Published 2020

Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function

by Duvallet, Claire, Alm, Eric J.
Published 2020

Random sequences rapidly evolve into de novo promoters

by Yona, Avihu H., Alm, Eric J., Gore, Jeff, Yona, Avihu, Alm, Eric J
Published 2018

Dysbiosis is not an answer

by Olesen, Scott Wilder, Alm, Eric J
Published 2018

Rapid evolutionary innovation during an Archaean genetic expansion

by David, Lawrence A., Alm, Eric J.
Published 2011

Tracking Strains in the Microbiome: Insights from Metagenomics and Models

by Brito, Ilana Lauren, Alm, Eric J
Published 2018

Efficient Algorithms for the Reconciliation Problem with Gene Duplication, Horizontal Transfer and Loss

by Bansal, Mukul S., Alm, Eric J., Kellis, Manolis
Published 2012

Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss

by Bansal, Mukul S., Alm, Eric J., Kellis, Manolis
Published 2015

Structure, function and diversity of the healthy human microbiome

by Alm, Eric J., Friedman, Jonathan, Smillie, Christopher S.
Published 2013

dbOTU3: A new implementation of distribution-based OTU calling

by Olesen, Scott Wilder, Duvallet, Claire, Alm, Eric J
Published 2018

Using fecal microbiota as biomarkers for predictions of performance in the selective breeding process of pedigree broiler breeders

by Perrotta, Allison R., Rockafellow, Isaac, Alm, Eric J.
Published 2020

Interactions in self-assembled microbial communities saturate with diversity

by Yu, Xiaoqian, Polz, Martin F, Alm, Eric J
Published 2020

A framework for human microbiome research

by Friedman, Jonathan, Smillie, Chris Scott, Alm, Eric J.
Published 2013

Correcting for batch effects in case-control microbiome studies

by Gibbons, Sean Michael, Duvallet, Claire, Alm, Eric J
Published 2018

Local Gene Regulation Details a Recognition Code within the LacI Transcriptional Factor Family

by Camas, Francisco M., Alm, Eric J., Poyatos, Juan F.
Published 2011

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

by Polz, Martin F., Alm, Eric J., Hanage, William P.
Published 2015

Designing fecal microbiota transplant trials that account for differences in donor stool efficacy

by Olesen, Scott Wilder, Gurry, Thomas Jerome, Alm, Eric J
Published 2018

Improved gene tree error correction in the presence of horizontal gene transfer

by Bansal, Mukul S., Wu, Yi-Chieh, Alm, Eric J., Kellis, Manolis
Published 2015