Efficient Algorithms for the Reconciliation Problem with Gene Duplication, Horizontal Transfer and Loss

by Bansal, Mukul S., Alm, Eric J., Kellis, Manolis
Published 2012

Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss

by Bansal, Mukul S., Alm, Eric J., Kellis, Manolis
Published 2015

Detecting Highways of Horizontal Gene Transfer

by Bansal, Mukul S., Banay, Guy, Gogarten, J. Peter, Shamir, Ron
Published 2012

Improved gene tree error correction in the presence of horizontal gene transfer

by Bansal, Mukul S., Wu, Yi-Chieh, Alm, Eric J., Kellis, Manolis
Published 2015

A comparative encyclopedia of DNA elements in the mouse genome

by Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis
Published 2016

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees

by Wu, Yi-Chieh, Bansal, Mukul S., Kellis, Manolis, Rasmussen, Matthew D.
Published 2014

Pareto-optimal phylogenetic tree reconciliation

by Libeskind-Hadas, Ran, Wu, Yi-Chieh, Bansal, Mukul S., Kellis, Manolis, Wu, Yi-Chieh
Published 2015

Integrative analysis of 111 reference human epigenomes

by Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Yen, Angela, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ward, Lucas D., Sarkar, Abhishek Kulshreshtha, Quon, Gerald, Eaton, Matthew Lucas, Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Bansal, Mukul S., Kim, Ah Ram, Cowper Sal-lari, Richard, Sinnott-Armstrong, Nicholas A., Gjoneska, Elizabeta, Tsai, Li-Huei, Kellis, Manolis, Feizi- Khankandi, Soheil, Boyer, Laurie Ann
Published 2016