Understanding Microbiome Stability in a Changing World

by Ashley Shade
Published 2018-03-01

Computing Workflows for Biologists: A Roadmap.

by Ashley Shade, Tracy K Teal
Published 2015-01-01

Trait-based community assembly and succession of the infant gut microbiome

by John Guittar, Ashley Shade, Elena Litchman
Published 2019-02-01

Taxonomically-linked growth phenotypes during arsenic stress among arsenic resistant bacteria isolated from soils overlying the Centralia coal seam fire.

by Taylor K Dunivin, Justine Miller, Ashley Shade
Published 2018-01-01

A global survey of arsenic-related genes in soil microbiomes

by Taylor K. Dunivin, Susanna Y. Yeh, Ashley Shade
Published 2019-05-01

16S rRNA/rRNA Gene Ratios and Cell Activity Staining Reveal Consistent Patterns of Microbial Activity in Plant-Associated Soil

by Alan W. Bowsher, Patrick J. Kearns, Ashley Shade
Published 2019-04-01

A Synthetic Community System for Probing Microbial Interactions Driven by Exometabolites

by John L. Chodkowski, Ashley Shade, Pieter C. Dorrestein
Published 2017-11-01

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data

by Marius Vital, André Karch, Dietmar H. Pieper, Ashley Shade
Published 2017-12-01

RefSoil+: a Reference Database for Genes and Traits of Soil Plasmids

by Taylor K. Dunivin, Jinlyung Choi, Adina Howe, Ashley Shade
Published 2019-02-01

Seasonal Dynamics of Core Fungi in the Switchgrass Phyllosphere, and Co-Occurrence with Leaf Bacteria

by Alan W. Bowsher, Gian Maria Niccolò Benucci, Gregory Bonito, Ashley Shade
Published 2020-10-01

Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

by Keara L. Grady, Jackson W. Sorensen, Nejc Stopnisek, John Guittar, Ashley Shade
Published 2019-09-01

Managing Plant Microbiomes for Sustainable Biofuel Production

by Kateryna Zhalnina, Christine Hawkes, Ashley Shade, Mary K. Firestone, Jennifer Pett-Ridge
Published 2021-05-01

Locally Adapted Mimulus Ecotypes Differentially Impact Rhizosphere Bacterial and Archaeal Communities in an Environment-Dependent Manner

by Alan W. Bowsher, Patrick J. Kearns, Damian Popovic, David B. Lowry, Ashley Shade
Published 2020-01-01

Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem

by Sean M. Gibbons, Ylva Lekberg, Daniel L. Mummey, Naseer Sangwan, Philip W. Ramsey, Jack A. Gilbert, Ashley Shade
Published 2017-03-01

Erratum for Linz et al., “Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes”

by Alexandra M. Linz, Benjamin C. Crary, Ashley Shade, Sarah Owens, Jack A. Gilbert, Rob Knight, Katherine D. McMahon
Published 2017-07-01

Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes

by Alexandra M. Linz, Benjamin C. Crary, Ashley Shade, Sarah Owens, Jack A. Gilbert, Rob Knight, Katherine D. McMahon, Timothy M. LaPara
Published 2017-06-01

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat

by Embriette R. Hyde, Jose A. Navas-Molina, Se Jin Song, Jordan G. Kueneman, Gail Ackermann, Cesar Cardona, Gregory Humphrey, Don Boyer, Tom Weaver, Joseph R. Mendelson, Valerie J. McKenzie, Jack A. Gilbert, Rob Knight, Ashley Shade
Published 2016-08-01

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

by Terrence H. Bell, Kevin L. Hockett, Ricardo I. Alcalá-Briseño, Mary Barbercheck, Gwyn A. Beattie, Mary Ann Bruns, John E. Carlson, Taejung Chung, Alyssa Collins, Bryan Emmett, Paul Esker, Karen A. Garrett, Leland Glenna, Beth K. Gugino, María del Mar Jiménez-Gasco, Linda Kinkel, Jasna Kovac, Kurt P. Kowalski, Gretchen Kuldau, Johan H. J. Leveau, Matthew J. Michalska-Smith, Jessica Myrick, Kari Peter, Maria Fernanda Vivanco Salazar, Ashley Shade, Nejc Stopnisek, Xiaoqing Tan, Amy T. Welty, Kyle Wickings, Etienne Yergeau
Published 2019-05-01

Toward a Generalizable Framework of Disturbance Ecology Through Crowdsourced Science

by Emily B. Graham, Emily B. Graham, Colin Averill, Ben Bond-Lamberty, Joseph E. Knelman, Stefan Krause, Stefan Krause, Ariane L. Peralta, Ashley Shade, A. Peyton Smith, Susan J. Cheng, Nicolas Fanin, Cathryn Freund, Patricia E. Garcia, Sean M. Gibbons, Marc W. Van Goethem, Marouen Ben Guebila, Julia Kemppinen, Robert J. Nowicki, Juli G. Pausas, Samuel P. Reed, Jennifer Rocca, Aditi Sengupta, Debjani Sihi, Debjani Sihi, Marie Simonin, Michał Słowiński, Seth A. Spawn, Ira Sutherland, Jonathan D. Tonkin, Nathan I. Wisnoski, Samuel C. Zipper, Contributor Consortium, Arie Staal, Bhavna Arora, Callie Oldfield, Dipankar Dwivedi, Erin Larson, Ezequiel Santillan, J. Aaron Hogan, Jeff Atkins, Jianqiu Zheng, Jonas Lembrechts, Kaizad Patel, Kelsey Copes-Gerbitz, Kevin Winker, Laura Mudge, Mark Wong, Martin Nuñez, Miska Luoto, Rebecca Barnes
Published 2021-03-01