System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris

by Ali Navid, Yongqin Jiao, Sergio Ernesto Wong, Jennifer Pett-Ridge
Published 2019-05-01

Phylogenetic patterns in the microbial response to resource availability: amino acid incorporation in San Francisco Bay.

by Xavier Mayali, Peter K Weber, Shalini Mabery, Jennifer Pett-Ridge
Published 2014-01-01

The Switchgrass Microbiome: A Review of Structure, Function, and Taxonomic Distribution

by Rachel Hestrin, Marissa R. Lee, Briana K. Whitaker, Jennifer Pett-Ridge
Published 2021-03-01

Managing Plant Microbiomes for Sustainable Biofuel Production

by Kateryna Zhalnina, Christine Hawkes, Ashley Shade, Mary K. Firestone, Jennifer Pett-Ridge
Published 2021-05-01

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

by Samuel Bryson, Zhou Li, Jennifer Pett-Ridge, Robert L. Hettich, Xavier Mayali, Chongle Pan, Ryan S. Mueller, Nathan VerBerkmoes
Published 2016-04-01

Quantifying the effects of switchgrass (Panicum virgatum) on deep organic C stocks using natural abundance 14C in three marginal soils

by Eric W. Slessarev, Erin E. Nuccio, Karis J. McFarlane, Christina E. Ramon, Malay Saha, Mary K. Firestone, Jennifer Pett‐Ridge
Published 2020-10-01

VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature

by Olivier Zablocki, Michelle Michelsen, Marie Burris, Natalie Solonenko, Joanna Warwick-Dugdale, Romik Ghosh, Jennifer Pett-Ridge, Matthew B. Sullivan, Ben Temperton
Published 2021-03-01

Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat.

by Jackson Z Lee, R Craig Everroad, Ulas Karaoz, Angela M Detweiler, Jennifer Pett-Ridge, Peter K Weber, Leslie Prufert-Bebout, Brad M Bebout
Published 2018-01-01

Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP

by Anne E. Dekas, Anne E. Dekas, Alma E. Parada, Alma E. Parada, Xavier Mayali, Jed A. Fuhrman, Jessica Wollard, Peter K. Weber, Jennifer Pett-Ridge
Published 2019-12-01

Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm

by Rhona K. Stuart, Xavier Mayali, Amy A. Boaro, Adam Zemla, R. Craig Everroad, Daniel Nilson, Peter K. Weber, Mary Lipton, Brad M. Bebout, Jennifer Pett-Ridge, Michael P. Thelen
Published 2016-06-01

Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design

by Ella T. Sieradzki, Benjamin J. Koch, Alex Greenlon, Rohan Sachdeva, Rex R. Malmstrom, Rebecca L. Mau, Steven J. Blazewicz, Mary K. Firestone, Kirsten S. Hofmockel, Egbert Schwartz, Bruce A. Hungate, Jennifer Pett-Ridge
Published 2020-07-01

Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop

by Javier A. Ceja-Navarro, Yuan Wang, Daliang Ning, Abelardo Arellano, Leila Ramanculova, Mengting Maggie Yuan, Alyssa Byer, Kelly D. Craven, Malay C. Saha, Eoin L. Brodie, Jennifer Pett-Ridge, Mary K. Firestone
Published 2021-04-01

Estimating taxon‐specific population dynamics in diverse microbial communities

by Benjamin J. Koch, Theresa A. McHugh, Michaela Hayer, Egbert Schwartz, Steven J. Blazewicz, Paul Dijkstra, Natasja vanGestel, Jane C. Marks, Rebecca L. Mau, Ember M. Morrissey, Jennifer Pett‐Ridge, Bruce A. Hungate
Published 2018-01-01

Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community

by Bram W. Stone, Junhui Li, Benjamin J. Koch, Steven J. Blazewicz, Paul Dijkstra, Michaela Hayer, Kirsten S. Hofmockel, Xiao-Jun Allen Liu, Rebecca L. Mau, Ember M. Morrissey, Jennifer Pett-Ridge, Egbert Schwartz, Bruce A. Hungate
Published 2021-06-01

Author Correction: Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community

by Bram W. Stone, Junhui Li, Benjamin J. Koch, Steven J. Blazewicz, Paul Dijkstra, Michaela Hayer, Kirsten S. Hofmockel, Xiao-Jun Allen Liu, Rebecca L. Mau, Ember M. Morrissey, Jennifer Pett-Ridge, Egbert Schwartz, Bruce A. Hungate
Published 2021-06-01

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

by Patrik D’haeseleer, Jackson Z. Lee, Leslie Prufert-Bebout, Luke C. Burow, Angela M. Detweiler, Peter K. Weber, Ulas Karaoz, Eoin L. Brodie, Tijana Glavina del Rio, Susannah G. Tringe, Brad M. Bebout, Jennifer Pett-Ridge
Published 2017-11-01

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

by Emiley A. Eloe-Fadrosh, David Paez-Espino, Jessica Jarett, Peter F. Dunfield, Brian P. Hedlund, Anne E. Dekas, Stephen E. Grasby, Allyson L. Brady, Hailiang Dong, Brandon R. Briggs, Wen-Jun Li, Danielle Goudeau, Rex Malmstrom, Amrita Pati, Jennifer Pett-Ridge, Edward M. Rubin, Tanja Woyke, Nikos C. Kyrpides, Natalia N. Ivanova
Published 2016-01-01

Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons

by Tess E. Brewer, Emma L. Aronson, Keshav Arogyaswamy, Sharon A. Billings, Jon K. Botthoff, Ashley N. Campbell, Nicholas C. Dove, Dawson Fairbanks, Rachel E. Gallery, Stephen C. Hart, Jason Kaye, Gary King, Geoffrey Logan, Kathleen A. Lohse, Mia R. Maltz, Emilio Mayorga, Caitlin O’Neill, Sarah M. Owens, Aaron Packman, Jennifer Pett-Ridge, Alain F. Plante, Daniel D. Richter, Whendee L. Silver, Wendy H. Yang, Noah Fierer
Published 2019-10-01