High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome.

by Atsushi Fukushima, Michimi Nakamura, Hideyuki Suzuki, Kazuki Saito, Mami Yamazaki
Published 2015-01-01

Development of a Direct Headspace Collection Method from Arabidopsis Seedlings Using HS-SPME-GC-TOF-MS Analysis

by Kazuki Saito, Makoto Kobayashi, Miyako Kusano, Yumiko Iizuka, Atsushi Fukushima
Published 2013-04-01

Reduction in sucrose contents by downregulation of fructose-1,6-bisphosphatase 2 causes tiller outgrowth cessation in rice mutants lacking glutamine synthetase1;2

by Miwa Ohashi, Keiki Ishiyama, Miyako Kusano, Atsushi Fukushima, Soichi Kojima, Toshihiko Hayakawa, Tomoyuki Yamaya
Published 2018-12-01

Whole transcriptome analysis using next-generation sequencing of sterile-cultured Eisenia andrei for immune system research.

by Yoshikazu Mikami, Atsushi Fukushima, Takao Kuwada-Kusunose, Tetsuya Sakurai, Taiichi Kitano, Yusuke Komiyama, Takashi Iwase, Kazuo Komiyama
Published 2015-01-01

A Systems Analysis With “Simplified Source-Sink Model” Reveals Metabolic Reprogramming in a Pair of Source-to-Sink Organs During Early Fruit Development in Tomato by LED Light Trea...

by Atsushi Fukushima, Shoko Hikosaka, Makoto Kobayashi, Tomoko Nishizawa, Kazuki Saito, Kazuki Saito, Eiji Goto, Miyako Kusano, Miyako Kusano
Published 2018-10-01

eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice

by Takeshi Kuroha, Takeshi Kuroha, Keisuke Nagai, Yusuke Kurokawa, Yoshiaki Nagamura, Miyako Kusano, Miyako Kusano, Hideshi Yasui, Motoyuki Ashikari, Atsushi Fukushima
Published 2017-10-01

Effects of Combined Low Glutathione with Mild Oxidative and Low Phosphorus Stress on the Metabolism of Arabidopsis thaliana

by Atsushi Fukushima, Mami Iwasa, Mami Iwasa, Ryo Nakabayashi, Makoto Kobayashi, Tomoko Nishizawa, Yozo Okazaki, Kazuki Saito, Kazuki Saito, Miyako Kusano, Miyako Kusano
Published 2017-08-01

Maize specialized metabolome networks reveal organ-preferential mixed glycosides

by Sandrien Desmet, Yvan Saeys, Kevin Verstaen, Rebecca Dauwe, Hoon Kim, Claudiu Niculaes, Atsushi Fukushima, Geert Goeminne, Ruben Vanholme, John Ralph, Wout Boerjan, Kris Morreel
Published 2021-01-01

Covering chemical diversity of genetically-modified tomatoes using metabolomics for objective substantial equivalence assessment.

by Miyako Kusano, Henning Redestig, Tadayoshi Hirai, Akira Oikawa, Fumio Matsuda, Atsushi Fukushima, Masanori Arita, Shin Watanabe, Megumu Yano, Kyoko Hiwasa-Tanase, Hiroshi Ezura, Kazuki Saito
Published 2011-01-01

Metabolite and Phytohormone Profiling Illustrates Metabolic Reprogramming as an Escape Strategy of Deepwater Rice during Partially Submerged Stress

by Atsushi Fukushima, Takeshi Kuroha, Keisuke Nagai, Yoko Hattori, Makoto Kobayashi, Tomoko Nishizawa, Mikiko Kojima, Yoshinori Utsumi, Akira Oikawa, Motoaki Seki, Hitoshi Sakakibara, Kazuki Saito, Motoyuki Ashikari, Miyako Kusano
Published 2020-02-01

Comparative characterization of the leaf tissue of Physalis alkekengi and Physalis peruviana using RNA-seq and metabolite profiling

by Atsushi Fukushima, Michimi Nakamura, Hideyuki Suzuki, Mami Yamazaki, Eva Knoch, Tetsuya Mori, Naoyuki Umemoto, Masaki Morita, Go Hirai, Go Hirai, Mikiko Sodeoka, Mikiko Sodeoka, Kazuki Saito, Kazuki Saito
Published 2016-12-01

BioHackathon 2015: Semantics of data for life sciences and reproducible research [version 1; peer review: 2 approved]

by Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan Bolton, Raoul J. P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin B. Cohen, Eric W. Deutsch, Jesualdo T. Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
Published 2020-02-01