Network archaeology: uncovering ancient networks from present-day interactions.

by Saket Navlakha, Carl Kingsford
Published 2011-04-01

Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

by Heewook Lee, Carl Kingsford
Published 2018-02-01

Semi-nonparametric modeling of topological domain formation from epigenetic data

by Emre Sefer, Carl Kingsford
Published 2019-03-01

Exact transcript quantification over splice graphs

by Cong Ma, Hongyu Zheng, Carl Kingsford
Published 2021-05-01

Context-aware seeds for read mapping

by Hongyi Xin, Mingfu Shao, Carl Kingsford
Published 2020-05-01

SQUID: transcriptomic structural variation detection from RNA-seq

by Cong Ma, Mingfu Shao, Carl Kingsford
Published 2018-04-01

VariantStore: an index for large-scale genomic variant search

by Prashant Pandey, Yinjie Gao, Carl Kingsford
Published 2021-08-01

Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads

by Laura H. Tung, Mingfu Shao, Carl Kingsford
Published 2019-12-01

2009 Swine-origin influenza A (H1N1) resembles previous influenza isolates.

by Carl Kingsford, Niranjan Nagarajan, Steven L Salzberg
Published 2009-07-01

Detecting transcriptomic structural variants in heterogeneous contexts via the Multiple Compatible Arrangements Problem

by Yutong Qiu, Cong Ma, Han Xie, Carl Kingsford
Published 2020-05-01

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.

by Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford
Published 2017-10-01

Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data

by Trevor S. Frisby, Shawn J. Baker, Guillaume Marçais, Quang Minh Hoang, Carl Kingsford, Christopher J. Langmead
Published 2021-04-01

Alignment and mapping methodology influence transcript abundance estimation

by Avi Srivastava, Laraib Malik, Hirak Sarkar, Mohsen Zakeri, Fatemeh Almodaresi, Charlotte Soneson, Michael I. Love, Carl Kingsford, Rob Patro
Published 2020-09-01

Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses

by Steven L. Salzberg, Carl Kingsford, Giovanni Cattoli, David J. Spiro, Daniel A. Janies, Mona Mehrez Aly, Ian H. Brown, Emmanuel Couacy-Hymann, Gian Mario De Mia, Do Huu Dung, Annalisa Guercio, Tony Joannis, Ali Safar Maken Ali, Azizullah Osmani, Iolanda Padalino, Magdi D. Saad, Vladimir Savić, Naomi A. Sengamalay, Samuel L. Yingst, Jennifer Zaborsky, Olga Zorman-Rojs, Elodie Ghedin, Ilaria Capua
Published 2007-05-01