Fast effect size shrinkage software for beta-binomial models of allelic imbalance [version 2; peer review: 1 approved, 2 approved with reservations]

by Joshua P. Zitovsky, Michael I. Love
Published 2020-12-01

MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies.

by Arjun Bhattacharya, Yun Li, Michael I Love
Published 2021-03-01

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification [version 3; referees: 1 approved, 2 approved with reservations]

by Michael I. Love, Charlotte Soneson, Rob Patro
Published 2018-10-01

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification [version 2; referees: 1 approved, 2 approved with reservations]

by Michael I. Love, Charlotte Soneson, Rob Patro
Published 2018-09-01

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences [version 2; referees: 2 approved]

by Charlotte Soneson, Michael I. Love, Mark D. Robinson
Published 2016-02-01

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences [version 1; referees: 2 approved]

by Charlotte Soneson, Michael I. Love, Mark D. Robinson
Published 2015-12-01

RNA-Seq workflow: gene-level exploratory analysis and differential expression [version 2; referees: 2 approved]

by Michael I. Love, Simon Anders, Vladislav Kim, Wolfgang Huber
Published 2016-11-01

RNA-Seq workflow: gene-level exploratory analysis and differential expression [version 1; referees: 2 approved]

by Michael I. Love, Simon Anders, Vladislav Kim, Wolfgang Huber
Published 2015-10-01

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.

by Alena van Bömmel, Michael I Love, Ho-Ryun Chung, Martin Vingron
Published 2018-08-01

ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R [version 1; peer review: 1 approved, 2 approved with reservations]

by Charlotte Soneson, Federico Marini, Florian Geier, Michael I. Love, Michael B. Stadler
Published 2020-06-01

Improving the completeness of public metadata accompanying omics studies

by Anushka Rajesh, Yutong Chang, Malak S. Abedalthagafi, Annie Wong-Beringer, Michael I. Love, Serghei Mangul
Published 2021-04-01

A framework for transcriptome-wide association studies in breast cancer in diverse study populations

by Arjun Bhattacharya, Montserrat García-Closas, Andrew F. Olshan, Charles M. Perou, Melissa A. Troester, Michael I. Love
Published 2020-02-01

Alignment and mapping methodology influence transcript abundance estimation

by Avi Srivastava, Laraib Malik, Hirak Sarkar, Mohsen Zakeri, Fatemeh Almodaresi, Charlotte Soneson, Michael I. Love, Carl Kingsford, Rob Patro
Published 2020-09-01

Tximeta: Reference sequence checksums for provenance identification in RNA-seq.

by Michael I Love, Charlotte Soneson, Peter F Hickey, Lisa K Johnson, N Tessa Pierce, Lori Shepherd, Martin Morgan, Rob Patro
Published 2020-02-01

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

by Koen Van den Berge, Fanny Perraudeau, Charlotte Soneson, Michael I. Love, Davide Risso, Jean-Philippe Vert, Mark D. Robinson, Sandrine Dudoit, Lieven Clement
Published 2018-02-01

SCISSOR: a framework for identifying structural changes in RNA transcripts

by Hyo Young Choi, Heejoon Jo, Xiaobei Zhao, Katherine A. Hoadley, Scott Newman, Jeremiah Holt, Michele C. Hayward, Michael I. Love, J. S. Marron, D. Neil Hayes
Published 2021-01-01

Hepatocyte growth factor pathway expression in breast cancer by race and subtype

by Gieira S. Jones, Katherine A. Hoadley, Linnea T. Olsson, Alina M. Hamilton, Arjun Bhattacharya, Erin L. Kirk, Heather J. Tipaldos, Jodie M. Fleming, Michael I. Love, Hazel B. Nichols, Andrew F. Olshan, Melissa A. Troester
Published 2021-08-01

Community-wide hackathons to identify central themes in single-cell multi-omics

by Kim-Anh Lê Cao, Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb, Atul Deshpande, Yuzhou Feng, Pratheepa Jeganathan, Melanie Loth, Chen Meng, Wancen Mu, Vera Pancaldi, Kris Sankaran, Amrit Singh, Joshua S. Sodicoff, Genevieve L. Stein-O’Brien, Ayshwarya Subramanian, Joshua D. Welch, Yue You, Ricard Argelaguet, Vincent J. Carey, Ruben Dries, Casey S. Greene, Susan Holmes, Michael I. Love, Matthew E. Ritchie, Guo-Cheng Yuan, Aedin C. Culhane, Elana Fertig
Published 2021-08-01

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

by Kim-Anh Lê Cao, Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb, Atul Deshpande, Yuzhou Feng, Pratheepa Jeganathan, Melanie Loth, Chen Meng, Wancen Mu, Vera Pancaldi, Kris Sankaran, Dario Righelli, Amrit Singh, Joshua S. Sodicoff, Genevieve L. Stein-O’Brien, Ayshwarya Subramanian, Joshua D. Welch, Yue You, Ricard Argelaguet, Vincent J. Carey, Ruben Dries, Casey S. Greene, Susan Holmes, Michael I. Love, Matthew E. Ritchie, Guo-Cheng Yuan, Aedin C. Culhane, Elana Fertig
Published 2021-08-01