A framework for transcriptome-wide association studies in breast cancer in diverse study populations

by Arjun Bhattacharya, Montserrat García-Closas, Andrew F. Olshan, Charles M. Perou, Melissa A. Troester, Michael I. Love
Published 2020-02-01

iCARE: An R package to build, validate and apply absolute risk models.

by Parichoy Pal Choudhury, Paige Maas, Amber Wilcox, William Wheeler, Mark Brook, David Check, Montserrat Garcia-Closas, Nilanjan Chatterjee
Published 2020-01-01

Detection of somatic mutations by high-resolution DNA melting (HRM) analysis in multiple cancers.

by Jesus Gonzalez-Bosquet, Jacob Calcei, Jun S Wei, Montserrat Garcia-Closas, Mark E Sherman, Stephen Hewitt, Joseph Vockley, Jolanta Lissowska, Hannah P Yang, Javed Khan, Stephen Chanock
Published 2011-01-01

Comparative validation of the BOADICEA and Tyrer-Cuzick breast cancer risk models incorporating classical risk factors and polygenic risk in a population-based prospective cohort o...

by Parichoy Pal Choudhury, Mark N. Brook, Amber N. Hurson, Andrew Lee, Charlotta V. Mulder, Penny Coulson, Minouk J. Schoemaker, Michael E. Jones, Anthony J. Swerdlow, Nilanjan Chatterjee, Antonis C. Antoniou, Montserrat Garcia-Closas
Published 2021-02-01

Large-scale evaluation of candidate genes identifies associations between VEGF polymorphisms and bladder cancer risk.

by Montserrat García-Closas, Núria Malats, Francisco X Real, Meredith Yeager, Robert Welch, Debra Silverman, Manolis Kogevinas, Mustafa Dosemeci, Jonine Figueroa, Nilanjan Chatterjee, Adonina Tardón, Consol Serra, Alfredo Carrato, Reina García-Closas, Cristiane Murta-Nascimento, Nathaniel Rothman, Stephen J Chanock
Published 2007-02-01

Application of multi-SNP approaches Bayesian LASSO and AUC-RF to detect main effects of inflammatory-gene variants associated with bladder cancer risk.

by Evangelina López de Maturana, Yuanqing Ye, M Luz Calle, Nathaniel Rothman, Víctor Urrea, Manolis Kogevinas, Sandra Petrus, Stephen J Chanock, Adonina Tardón, Montserrat García-Closas, Anna González-Neira, Gemma Vellalta, Alfredo Carrato, Arcadi Navarro, Belén Lorente-Galdós, Debra T Silverman, Francisco X Real, Xifeng Wu, Núria Malats
Published 2013-01-01

Genetic variation in the TP53 pathway and bladder cancer risk. a comprehensive analysis.

by Silvia Pineda, Roger L Milne, M Luz Calle, Nathaniel Rothman, Evangelina López de Maturana, Jesús Herranz, Manolis Kogevinas, Stephen J Chanock, Adonina Tardón, Mirari Márquez, Lin T Guey, Montserrat García-Closas, Josep Lloreta, Erin Baum, Anna González-Neira, Alfredo Carrato, Arcadi Navarro, Debra T Silverman, Francisco X Real, Núria Malats
Published 2014-01-01

Blood DNA methylation and breast cancer risk: a meta-analysis of four prospective cohort studies

by Clara Bodelon, Srikant Ambatipudi, Pierre-Antoine Dugué, Annelie Johansson, Joshua N. Sampson, Belynda Hicks, Eric Karlins, Amy Hutchinson, Cyrille Cuenin, Veronique Chajès, Melissa C. Southey, Isabelle Romieu, Graham G. Giles, Dallas English, Silvia Polidoro, Manuela Assumma, Laura Baglietto, Paolo Vineis, Gianluca Severi, Zdenko Herceg, James M. Flanagan, Roger L. Milne, Montserrat Garcia-Closas
Published 2019-05-01

Diesel exhaust and bladder cancer risk by pathologic stage and grade subtypes

by Stella Koutros, Manolis Kogevinas, Melissa C. Friesen, Patricia A. Stewart, Dalsu Baris, Margaret R. Karagas, Molly Schwenn, Alison Johnson, G.M. Monawar Hosain, Consol Serra, Adonina Tardon, Alfredo Carrato, Reina Garcia-Closas, Lee E. Moore, Michael L. Nickerson, Stephen M. Hewitt, Petra Lenz, Alan R. Schned, Josep Lloreta, Yves Allory, Haoyu Zhang, Nilanjan Chatterjee, Montserrat Garcia-Closas, Nathaniel Rothman, Núria Malats, Debra T. Silverman
Published 2020-02-01

Immune gene expression profiling reveals heterogeneity in luminal breast tumors

by Bin Zhu, Lap Ah Tse, Difei Wang, Hela Koka, Tongwu Zhang, Mustapha Abubakar, Priscilla Lee, Feng Wang, Cherry Wu, Koon Ho Tsang, Wing-cheong Chan, Sze Hong Law, Mengjie Li, Wentao Li, Suyang Wu, Zhiguang Liu, Bixia Huang, Han Zhang, Eric Tang, Zhengyan Kan, Soohyeon Lee, Yeon Hee Park, Seok Jin Nam, Mingyi Wang, Xuezheng Sun, Kristine Jones, Bin Zhu, Amy Hutchinson, Belynda Hicks, Ludmila Prokunina-Olsson, Jianxin Shi, Montserrat Garcia-Closas, Stephen Chanock, Xiaohong R. Yang
Published 2019-12-01

Circulating tumor DNA is readily detectable among Ghanaian breast cancer patients supporting non-invasive cancer genomic studies in Africa

by Samuel Terkper Ahuno, Anna-Lisa Doebley, Thomas U. Ahearn, Joel Yarney, Nicholas Titiloye, Nancy Hamel, Ernest Adjei, Joe-Nat Clegg-Lamptey, Lawrence Edusei, Baffour Awuah, Xiaoyu Song, Verna Vanderpuye, Mustapha Abubakar, Maire Duggan, Daniel G. Stover, Kofi Nyarko, John M. S. Bartlett, Francis Aitpillah, Daniel Ansong, Kevin L. Gardner, Felix Andy Boateng, Anne M. Bowcock, Carlos Caldas, William D. Foulkes, Seth Wiafe, Beatrice Wiafe-Addai, Montserrat Garcia-Closas, Alexander Kwarteng, Gavin Ha, Jonine D. Figueroa, Paz Polak, the Ghana Breast Health Study Team
Published 2021-09-01

Large-scale pathway-based analysis of bladder cancer genome-wide association data from five studies of European background.

by Idan Menashe, Jonine D Figueroa, Montserrat Garcia-Closas, Nilanjan Chatterjee, Nuria Malats, Antoni Picornell, Dennis Maeder, Qi Yang, Ludmila Prokunina-Olsson, Zhaoming Wang, Francisco X Real, Kevin B Jacobs, Dalsu Baris, Michael Thun, Demetrius Albanes, Mark P Purdue, Manolis Kogevinas, Amy Hutchinson, Yi-Ping Fu, Wei Tang, Laurie Burdette, Adonina Tardón, Consol Serra, Alfredo Carrato, Reina García-Closas, Josep Lloreta, Alison Johnson, Molly Schwenn, Alan Schned, Gerald Andriole, Amanda Black, Eric J Jacobs, Ryan W Diver, Susan M Gapstur, Stephanie J Weinstein, Jarmo Virtamo, Neil E Caporaso, Maria Teresa Landi, Joseph F Fraumeni, Stephen J Chanock, Debra T Silverman, Nathaniel Rothman
Published 2012-01-01

The obesity-associated polymorphisms FTO rs9939609 and MC4R rs17782313 and endometrial cancer risk in non-Hispanic white women.

by Galina Lurie, Mia M Gaudet, Amanda B Spurdle, Michael E Carney, Lynne R Wilkens, Hannah P Yang, Noel S Weiss, Penelope M Webb, Pamela J Thompson, Keith Terada, Veronica Wendy Setiawan, Timothy R Rebbeck, Jennifer Prescott, Irene Orlow, Tracy O'Mara, Sara H Olson, Steven A Narod, Rayna K Matsuno, Jolanta Lissowska, Xiaolin Liang, Douglas A Levine, Loic Le Marchand, Laurence N Kolonel, Brian E Henderson, Montserrat Garcia-Closas, Jennifer Anne Doherty, Immaculata De Vivo, Chu Chen, Louise A Brinton, Mohammad R Akbari, Australian National Endometrial Cancer Study Group, Epidemiology of Endometrial Cancer Consortium (E2C2), Marc T Goodman
Published 2011-02-01

Inherited variants in regulatory T cell genes and outcome of ovarian cancer.

by Ellen L Goode, Melissa DeRycke, Kimberly R Kalli, Ann L Oberg, Julie M Cunningham, Matthew J Maurer, Brooke L Fridley, Sebastian M Armasu, Daniel J Serie, Priya Ramar, Krista Goergen, Robert A Vierkant, David N Rider, Hugues Sicotte, Chen Wang, Boris Winterhoff, Catherine M Phelan, Joellen M Schildkraut, Rachel P Weber, Ed Iversen, Andrew Berchuck, Rebecca Sutphen, Michael J Birrer, Shalaka Hampras, Leah Preus, Simon A Gayther, Susan J Ramus, Nicolas Wentzensen, Hannah P Yang, Montserrat Garcia-Closas, Honglin Song, Jonathan Tyrer, Paul P D Pharoah, Gottfried Konecny, Thomas A Sellers, Roberta B Ness, Lara E Sucheston, Kunle Odunsi, Lynn C Hartmann, Kirsten B Moysich, Keith L Knutson
Published 2013-01-01

Subtyping of breast cancer by immunohistochemistry to investigate a relationship between subtype and short and long term survival: a collaborative analysis of data for 10,159 cases...

by Fiona M Blows, Kristy E Driver, Marjanka K Schmidt, Annegien Broeks, Flora E van Leeuwen, Jelle Wesseling, Maggie C Cheang, Karen Gelmon, Torsten O Nielsen, Carl Blomqvist, Päivi Heikkilä, Tuomas Heikkinen, Heli Nevanlinna, Lars A Akslen, Louis R Bégin, William D Foulkes, Fergus J Couch, Xianshu Wang, Vicky Cafourek, Janet E Olson, Laura Baglietto, Graham G Giles, Gianluca Severi, Catriona A McLean, Melissa C Southey, Emad Rakha, Andrew R Green, Ian O Ellis, Mark E Sherman, Jolanta Lissowska, William F Anderson, Angela Cox, Simon S Cross, Malcolm W R Reed, Elena Provenzano, Sarah-Jane Dawson, Alison M Dunning, Manjeet Humphreys, Douglas F Easton, Montserrat García-Closas, Carlos Caldas, Paul D Pharoah, David Huntsman
Published 2010-05-01

Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer

by Francisco J. Candido dos Reis, Stuart Lynn, H. Raza Ali, Diana Eccles, Andrew Hanby, Elena Provenzano, Carlos Caldas, William J. Howat, Leigh-Anne McDuffus, Bin Liu, Frances Daley, Penny Coulson, Rupesh J. Vyas, Leslie M. Harris, Joanna M. Owens, Amy F.M. Carton, Janette P. McQuillan, Andy M. Paterson, Zohra Hirji, Sarah K. Christie, Amber R. Holmes, Marjanka K. Schmidt, Montserrat Garcia-Closas, Douglas F. Easton, Manjeet K. Bolla, Qin Wang, Javier Benitez, Roger L. Milne, Arto Mannermaa, Fergus Couch, Peter Devilee, Robert A.E.M. Tollenaar, Caroline Seynaeve, Angela Cox, Simon S. Cross, Fiona M. Blows, Joyce Sanders, Renate de Groot, Jonine Figueroa, Mark Sherman, Maartje Hooning, Hermann Brenner, Bernd Holleczek, Christa Stegmaier, Chris Lintott, Paul D.P. Pharoah
Published 2015-07-01

Winner's Curse Correction and Variable Thresholding Improve Performance of Polygenic Risk Modeling Based on Genome-Wide Association Study Summary-Level Data.

by Jianxin Shi, Ju-Hyun Park, Jubao Duan, Sonja T Berndt, Winton Moy, Kai Yu, Lei Song, William Wheeler, Xing Hua, Debra Silverman, Montserrat Garcia-Closas, Chao Agnes Hsiung, Jonine D Figueroa, Victoria K Cortessis, Núria Malats, Margaret R Karagas, Paolo Vineis, I-Shou Chang, Dongxin Lin, Baosen Zhou, Adeline Seow, Keitaro Matsuo, Yun-Chul Hong, Neil E Caporaso, Brian Wolpin, Eric Jacobs, Gloria M Petersen, Alison P Klein, Donghui Li, Harvey Risch, Alan R Sanders, Li Hsu, Robert E Schoen, Hermann Brenner, MGS (Molecular Genetics of Schizophrenia) GWAS Consortium, GECCO (The Genetics and Epidemiology of Colorectal Cancer Consortium), GAME-ON/TRICL (Transdisciplinary Research in Cancer of the Lung) GWAS Consortium, PRACTICAL (PRostate cancer AssoCiation group To Investigate Cancer Associated aLterations) Consortium, PanScan Consortium, GAME-ON/ELLIPSE Consortium, Rachael Stolzenberg-Solomon, Pablo Gejman, Qing Lan, Nathaniel Rothman, Laufey T Amundadottir, Maria Teresa Landi, Douglas F Levinson, Stephen J Chanock, Nilanjan Chatterjee
Published 2016-12-01

Prediction and clinical utility of a contralateral breast cancer risk model

by Daniele Giardiello, Ewout W. Steyerberg, Michael Hauptmann, Muriel A. Adank, Delal Akdeniz, Carl Blomqvist, Stig E. Bojesen, Manjeet K. Bolla, Mariël Brinkhuis, Jenny Chang-Claude, Kamila Czene, Peter Devilee, Alison M. Dunning, Douglas F. Easton, Diana M. Eccles, Peter A. Fasching, Jonine Figueroa, Henrik Flyger, Montserrat García-Closas, Lothar Haeberle, Christopher A. Haiman, Per Hall, Ute Hamann, John L. Hopper, Agnes Jager, Anna Jakubowska, Audrey Jung, Renske Keeman, Iris Kramer, Diether Lambrechts, Loic Le Marchand, Annika Lindblom, Jan Lubiński, Mehdi Manoochehri, Luigi Mariani, Heli Nevanlinna, Hester S. A. Oldenburg, Saskia Pelders, Paul D. P. Pharoah, Mitul Shah, Sabine Siesling, Vincent T. H. B. M. Smit, Melissa C. Southey, William J. Tapper, Rob A. E. M. Tollenaar, Alexandra J. van den Broek, Carolien H. M. van Deurzen, Flora E. van Leeuwen, Chantal van Ongeval, Laura J. Van’t Veer, Qin Wang, Camilla Wendt, Pieter J. Westenend, Maartje J. Hooning, Marjanka K. Schmidt
Published 2019-12-01

Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants

by Xiang Shu, Jirong Long, Qiuyin Cai, Sun-Seog Kweon, Ji-Yeob Choi, Michiaki Kubo, Sue K. Park, Manjeet K. Bolla, Joe Dennis, Qin Wang, Yaohua Yang, Jiajun Shi, Xingyi Guo, Bingshan Li, Ran Tao, Kristan J. Aronson, Kelvin Y. K. Chan, Tsun L. Chan, Yu-Tang Gao, Mikael Hartman, Weang Kee Ho, Hidemi Ito, Motoki Iwasaki, Hiroji Iwata, Esther M. John, Yoshio Kasuga, Ui Soon Khoo, Mi-Kyung Kim, Sun-Young Kong, Allison W. Kurian, Ava Kwong, Eun-Sook Lee, Jingmei Li, Artitaya Lophatananon, Siew-Kee Low, Shivaani Mariapun, Koichi Matsuda, Keitaro Matsuo, Kenneth Muir, Dong-Young Noh, Boyoung Park, Min-Ho Park, Chen-Yang Shen, Min-Ho Shin, John J. Spinelli, Atsushi Takahashi, Chiuchen Tseng, Shoichiro Tsugane, Anna H. Wu, Yong-Bing Xiang, Taiki Yamaji, Ying Zheng, Roger L. Milne, Alison M. Dunning, Paul D. P. Pharoah, Montserrat García-Closas, Soo-Hwang Teo, Xiao-ou Shu, Daehee Kang, Douglas F. Easton, Jacques Simard, Wei Zheng
Published 2020-03-01

Evaluation of candidate stromal epithelial cross-talk genes identifies association between risk of serous ovarian cancer and TERT, a cancer susceptibility "hot-spot".

by Sharon E Johnatty, Jonathan Beesley, Xiaoqing Chen, Stuart Macgregor, David L Duffy, Amanda B Spurdle, Anna deFazio, Natalie Gava, Penelope M Webb, Mary Anne Rossing, Jennifer Anne Doherty, Marc T Goodman, Galina Lurie, Pamela J Thompson, Lynne R Wilkens, Roberta B Ness, Kirsten B Moysich, Jenny Chang-Claude, Shan Wang-Gohrke, Daniel W Cramer, Kathryn L Terry, Susan E Hankinson, Shelley S Tworoger, Montserrat Garcia-Closas, Hannah Yang, Jolanta Lissowska, Stephen J Chanock, Paul D Pharoah, Honglin Song, Alice S Whitemore, Celeste L Pearce, Daniel O Stram, Anna H Wu, Malcolm C Pike, Simon A Gayther, Susan J Ramus, Usha Menon, Aleksandra Gentry-Maharaj, Hoda Anton-Culver, Argyrios Ziogas, Estrid Hogdall, Susanne K Kjaer, Claus Hogdall, Andrew Berchuck, Joellen M Schildkraut, Edwin S Iversen, Patricia G Moorman, Catherine M Phelan, Thomas A Sellers, Julie M Cunningham, Robert A Vierkant, David N Rider, Ellen L Goode, Izhak Haviv, Georgia Chenevix-Trench, Ovarian Cancer Association Consortium, Australian Ovarian Cancer Study Group, Australian Cancer Study (Ovarian Cancer)
Published 2010-07-01