COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission.

by Paul Tupper, Caroline Colijn
Published 2021-07-01

How competition governs whether moderate or aggressive treatment minimizes antibiotic resistance

by Caroline Colijn, Ted Cohen
Published 2015-09-01

A Maximum Entropy Method for the Prediction of Size Distributions

by Cornelia Metzig, Caroline Colijn
Published 2020-03-01

Phylogenies from dynamic networks.

by Cornelia Metzig, Oliver Ratmann, Daniela Bezemer, Caroline Colijn
Published 2019-02-01

Spontaneous emergence of multiple drug resistance in tuberculosis before and during therapy.

by Caroline Colijn, Ted Cohen, Ayalvadi Ganesh, Megan Murray
Published 2011-03-01

How the dynamics and structure of sexual contact networks shape pathogen phylogenies.

by Katy Robinson, Nick Fyson, Ted Cohen, Christophe Fraser, Caroline Colijn
Published 2013-01-01

A curated genome-scale metabolic model of Bordetella pertussis metabolism.

by Nick Fyson, Jerry King, Thomas Belcher, Andrew Preston, Caroline Colijn
Published 2017-07-01

ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections.

by Leonid Chindelevitch, Caroline Colijn, Prashini Moodley, Douglas Wilson, Ted Cohen
Published 2016-02-01

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.

by Don Klinkenberg, Jantien A Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga
Published 2017-05-01

Are survey-based estimates of the burden of drug resistant TB too low? Insight from a simulation study.

by Ted Cohen, Caroline Colijn, Bryson Finklea, Abigail Wright, Matteo Zignol, Alexander Pym, Megan Murray
Published 2008-06-01

Correction: Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models

by Aaron Brandes, Desmond S. Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E. Galagan
Published 2012-01-01

Inferring carbon sources from gene expression profiles using metabolic flux models.

by Aaron Brandes, Desmond S Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E Galagan
Published 2012-01-01

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study [version 1; referees: 1 approved, 2 approved with reservations]

by John A. Lees, Michelle Kendall, Julian Parkhill, Caroline Colijn, Stephen D. Bentley, Simon R. Harris
Published 2018-03-01

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study [version 2; referees: 2 approved, 1 approved with reservations]

by John A. Lees, Michelle Kendall, Julian Parkhill, Caroline Colijn, Stephen D. Bentley, Simon R. Harris
Published 2018-05-01

Correction: Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models.

by Aaron Brandes, Desmond S. Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E. Galagan
Published 2012-01-01

The cost-effectiveness of alternative vaccination strategies for polyvalent meningococcal vaccines in Burkina Faso: A transmission dynamic modeling study.

by Reza Yaesoubi, Caroline Trotter, Caroline Colijn, Maziar Yaesoubi, Anaïs Colombini, Stephen Resch, Paul A Kristiansen, F Marc LaForce, Ted Cohen
Published 2018-01-01

Evidence for transmission of COVID-19 prior to symptom onset

by Lauren C Tindale, Jessica E Stockdale, Michelle Coombe, Emma S Garlock, Wing Yin Venus Lau, Manu Saraswat, Louxin Zhang, Dongxuan Chen, Jacco Wallinga, Caroline Colijn
Published 2020-06-01

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production.

by Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S Lun, Brian Weiner, Maha R Farhat, Tan-Yun Cheng, D Branch Moody, Megan Murray, James E Galagan
Published 2009-08-01

Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil.

by Tarub S Mabud, Maria de Lourdes Delgado Alves, Albert I Ko, Sanjay Basu, Katharine S Walter, Ted Cohen, Barun Mathema, Caroline Colijn, Everton Lemos, Julio Croda, Jason R Andrews
Published 2019-01-01

Correction: Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil.

by Tarub S Mabud, Maria de Lourdes Delgado Alves, Albert I Ko, Sanjay Basu, Katharine S Walter, Ted Cohen, Barun Mathema, Caroline Colijn, Everton Lemos, Julio Croda, Jason R Andrews
Published 2019-03-01