Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.

by Colton J Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O Palsson
Published 2021-06-01

Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli.

by Bin Du, Laurence Yang, Colton J Lloyd, Xin Fang, Bernhard O Palsson
Published 2019-12-01

COBRAme: A computational framework for genome-scale models of metabolism and gene expression.

by Colton J Lloyd, Ali Ebrahim, Laurence Yang, Zachary A King, Edward Catoiu, Edward J O'Brien, Joanne K Liu, Bernhard O Palsson
Published 2018-07-01

Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models

by David Heckmann, Colton J. Lloyd, Nathan Mih, Yuanchi Ha, Daniel C. Zielinski, Zachary B. Haiman, Abdelmoneim Amer Desouki, Martin J. Lercher, Bernhard O. Palsson
Published 2018-12-01

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.

by Jean-Christophe Lachance, Colton J Lloyd, Jonathan M Monk, Laurence Yang, Anand V Sastry, Yara Seif, Bernhard O Palsson, Sébastien Rodrigue, Adam M Feist, Zachary A King, Pierre-Étienne Jacques
Published 2019-04-01

Genome‐scale metabolic modeling reveals key features of a minimal gene set

by Jean‐Christophe Lachance, Dominick Matteau, Joëlle Brodeur, Colton J Lloyd, Nathan Mih, Zachary A King, Thomas F Knight, Adam M Feist, Jonathan M Monk, Bernhard O Palsson, Pierre‐Étienne Jacques, Sébastien Rodrigue
Published 2021-07-01

The genetic basis for adaptation of model-designed syntrophic co-cultures.

by Colton J Lloyd, Zachary A King, Troy E Sandberg, Ying Hefner, Connor A Olson, Patrick V Phaneuf, Edward J O'Brien, Jon G Sanders, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M Feist
Published 2019-03-01