On the Use of Correlation and MI as a Measure of Metabolite—Metabolite Association for Network Differential Connectivity Analysis

by Sanjeevan Jahagirdar, Edoardo Saccenti
Published 2020-04-01

Cancers in Agreement? Exploring the Cross-Talk of Cancer Metabolomic and Transcriptomic Landscapes Using Publicly Available Data

by Derek van Tilborg, Edoardo Saccenti
Published 2021-01-01

In-Pero: Exploiting Deep Learning Embeddings of Protein Sequences to Predict the Localisation of Peroxisomal Proteins

by Marco Anteghini, Vitor Martins dos Santos, Edoardo Saccenti
Published 2021-06-01

A Metabolomic Perspective on Coeliac Disease

by Antonio Calabrò, Ewa Gralka, Claudio Luchinat, Edoardo Saccenti, Leonardo Tenori
Published 2014-01-01

Exploration of Blood Lipoprotein and Lipid Fraction Profiles in Healthy Subjects through Integrated Univariate, Multivariate, and Network Analysis Reveals Association of Lipase Act...

by Yasmijn Balder, Alessia Vignoli, Leonardo Tenori, Claudio Luchinat, Edoardo Saccenti
Published 2021-05-01

Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential

by Niels A. Zondervan, Vitor A. P. Martins dos Santos, Maria Suarez-Diez, Edoardo Saccenti
Published 2021-02-01

Milk Metabolomics Data Reveal the Energy Balance of Individual Dairy Cows in Early Lactation

by Wei Xu, Jacques Vervoort, Edoardo Saccenti, Renny van Hoeij, Bas Kemp, Ariette van Knegsel
Published 2018-10-01

Correction to: Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential

by Niels A. Zondervan, Vitor A. P. Martins dos Santos, Maria Suarez-Diez, Edoardo Saccenti
Published 2021-05-01

Strategies for individual phenotyping of linoleic and arachidonic acid metabolism using an oral glucose tolerance test.

by Edoardo Saccenti, John van Duynhoven, Doris M Jacobs, Age K Smilde, Huub C J Hoefsloot
Published 2015-01-01

Microbial Community Response of an Organohalide Respiring Enrichment Culture to Permanganate Oxidation.

by Nora B Sutton, Siavash Atashgahi, Edoardo Saccenti, Tim Grotenhuis, Hauke Smidt, Huub H M Rijnaarts
Published 2015-01-01

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.

by Edoardo Saccenti, David Nieuwenhuijse, Jasper J Koehorst, Vitor A P Martins dos Santos, Peter J Schaap
Published 2015-01-01

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics [version 3; referees: 1 approved, 2 ap...

by Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Published 2017-06-01

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics [version 2; referees: 1 approved, 2 ap...

by Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Published 2016-11-01

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics [version 1; referees: 1 approved, 2 ap...

by Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Published 2016-08-01

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling

by Nhung Pham, Ruben G. A. van Heck, Jesse C. J. van Dam, Peter J. Schaap, Edoardo Saccenti, Maria Suarez-Diez
Published 2019-02-01

Of monkeys and men: a metabolomic analysis of static and dynamic urinary metabolic phenotypes in two species.

by Edoardo Saccenti, Leonardo Tenori, Paul Verbruggen, Marieke E Timmerman, Jildau Bouwman, Jan van der Greef, Claudio Luchinat, Age K Smilde
Published 2014-01-01

Simplivariate models: uncovering the underlying biology in functional genomics data.

by Edoardo Saccenti, Johan A Westerhuis, Age K Smilde, Mariët J van der Werf, Jos A Hageman, Margriet M W B Hendriks
Published 2011-01-01

NMR Spectroscopy for Metabolomics Research

by Abdul-Hamid Emwas, Raja Roy, Ryan T. McKay, Leonardo Tenori, Edoardo Saccenti, G. A. Nagana Gowda, Daniel Raftery, Fatimah Alahmari, Lukasz Jaremko, Mariusz Jaremko, David S. Wishart
Published 2019-06-01

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity

by Prashanna Balaji Venkatasubramanian, Gamze Toydemir, Nicole de Wit, Edoardo Saccenti, Vitor A. P. Martins dos Santos, Peter van Baarlen, Jerry M. Wells, Maria Suarez-Diez, Jurriaan J. Mes
Published 2017-07-01

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions

by Linde F. C. Kampers, Ruben G. A. van Heck, Stefano Donati, Edoardo Saccenti, Rita J. M. Volkers, Peter J. Schaap, Maria Suarez-Diez, Pablo I. Nikel, Vitor A. P. Martins dos Santos
Published 2019-10-01