In-Pero: Exploiting Deep Learning Embeddings of Protein Sequences to Predict the Localisation of Peroxisomal Proteins

by Marco Anteghini, Vitor Martins dos Santos, Edoardo Saccenti
Published 2021-06-01

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.

by Mark Davids, Floor Hugenholtz, Vitor Martins dos Santos, Hauke Smidt, Michiel Kleerebezem, Peter J Schaap
Published 2016-01-01

Combined Transcriptome Sequencing of Mycoplasma hyopneumoniae and Infected Pig Lung Tissue Reveals Up-Regulation of Bacterial F1-Like ATPase and Down-Regulation of the P102 Cilium...

by Tjerko Kamminga, Tjerko Kamminga, Nirupama Benis, Vitor Martins dos Santos, Jetta J. E. Bijlsma, Peter J. Schaap
Published 2020-07-01

Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access.

by Kalyanasundaram Subramanian, Artur Góra, Ruud Spruijt, Karolina Mitusińska, Maria Suarez-Diez, Vitor Martins Dos Santos, Peter J Schaap
Published 2018-01-01

From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22°C to 37°C.

by Mariette Barbier, F Heath Damron, Piotr Bielecki, María Suárez-Diez, Jacek Puchałka, Sebastian Albertí, Vitor Martins Dos Santos, Joanna B Goldberg
Published 2014-01-01

Effects of β-lactam antibiotics and fluoroquinolones on human gut microbiota in relation to Clostridium difficile associated diarrhea.

by Henrik Knecht, Sven C Neulinger, Femke Anouska Heinsen, Carolin Knecht, Anke Schilhabel, Ruth A Schmitz, Alexandra Zimmermann, Vitor Martins dos Santos, Manuel Ferrer, Philip C Rosenstiel, Stefan Schreiber, Anette K Friedrichs, Stephan J Ott
Published 2014-01-01