Transferring knowledge of bacterial protein interaction networks to predict pathogen targeted human genes and immune signaling pathways: a case study on M. tuberculosis

by Suyu Mei, Erik K. Flemington, Kun Zhang
Published 2018-06-01

Significant Prognostic Features and Patterns of Somatic Mutations in Human Cancers

by Wensheng Zhang, Andrea Edwards, Erik K Flemington, Kun Zhang
Published 2017-02-01

Inferring polymorphism-induced regulatory gene networks active in human lymphocyte cell lines by weighted linear mixed model analysis of multiple RNA-Seq datasets.

by Wensheng Zhang, Andrea Edwards, Erik K Flemington, Kun Zhang
Published 2013-01-01

The sequence structures of human microRNA molecules and their implications.

by Zhide Fang, Ruofei Du, Andrea Edwards, Erik K Flemington, Kun Zhang
Published 2013-01-01

miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes.

by Wensheng Zhang, Andrea Edwards, Wei Fan, Erik K Flemington, Kun Zhang
Published 2012-01-01

Gammaherpesvirus RNAs Come Full Circle

by Nathan A. Ungerleider, Scott A. Tibbetts, Rolf Renne, Erik K. Flemington
Published 2019-04-01

Induction of a novel isoform of the lncRNA HOTAIR in Claudin‐low breast cancer cells attached to extracellular matrix

by Miao Li, Xi Li, Yan Zhuang, Erik K. Flemington, Zhen Lin, Bin Shan
Published 2017-12-01

miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines.

by Wensheng Zhang, Andrea Edwards, Dongxiao Zhu, Erik K Flemington, Prescott Deininger, Kun Zhang
Published 2012-01-01

Arsenic trioxide inhibits EBV reactivation and promotes cell death in EBV-positive lymphoma cells

by Qinyan Yin, Mark Sides, Christopher H. Parsons, Erik K. Flemington, Joseph A. Lasky
Published 2017-06-01

Data of relative mRNA and protein abundances of androgen receptor splice variants in castration-resistant prostate cancer

by Tianfang Ma, Nathan Ungerleider, Derek Y. Zhang, Eva Corey, Erik K. Flemington, Yan Dong
Published 2021-02-01

RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-seq datasets.

by Guorong Xu, Michael J Strong, Michelle R Lacey, Carl Baribault, Erik K Flemington, Christopher M Taylor
Published 2014-01-01

EBV miRNAs are potent effectors of tumor cell transcriptome remodeling in promoting immune escape.

by Nathan Ungerleider, Whitney Bullard, Mehmet Kara, Xia Wang, Claire Roberts, Rolf Renne, Scott Tibbetts, Erik K Flemington
Published 2021-05-01

Gammaherpesvirus Readthrough Transcription Generates a Long Non-Coding RNA That Is Regulated by Antisense miRNAs and Correlates with Enhanced Lytic Replication In Vivo

by Mehmet Kara, Tina O’Grady, Emily R. Feldman, April Feswick, Yiping Wang, Erik K. Flemington, Scott A. Tibbetts
Published 2019-01-01

Assessment of viral RNA in idiopathic pulmonary fibrosis using RNA-seq

by Qinyan Yin, Michael J. Strong, Yan Zhuang, Erik K. Flemington, Naftali Kaminski, Joao A. de Andrade, Joseph A. Lasky
Published 2020-04-01

Detection of Epstein-Barr Virus Infection in Non-Small Cell Lung Cancer

by Fayez Kheir, Mengmeng Zhao, Michael J. Strong, Yi Yu, Asuka Nanbo, Erik K. Flemington, Gilbert F. Morris, Krzysztof Reiss, Li Li, Zhen Lin
Published 2019-05-01

Microbial contamination in next generation sequencing: implications for sequence-based analysis of clinical samples.

by Michael J Strong, Guorong Xu, Lisa Morici, Sandra Splinter Bon-Durant, Melody Baddoo, Zhen Lin, Claire Fewell, Christopher M Taylor, Erik K Flemington
Published 2014-11-01

Genome-wide Transcript Structure Resolution Reveals Abundant Alternate Isoform Usage from Murine Gammaherpesvirus 68

by Tina O’Grady, April Feswick, Brett A. Hoffman, Yiping Wang, Eva M. Medina, Mehmet Kara, Linda F. van Dyk, Erik K. Flemington, Scott A. Tibbetts
Published 2019-06-01

Nerve growth factor receptor negates the tumor suppressor p53 as a feedback regulator

by Xiang Zhou, Qian Hao, Peng Liao, Shiwen Luo, Minhong Zhang, Guohui Hu, Hongbing Liu, Yiwei Zhang, Bo Cao, Melody Baddoo, Erik K Flemington, Shelya X Zeng, Hua Lu
Published 2016-06-01

The Epstein Barr virus circRNAome.

by Nathan Ungerleider, Monica Concha, Zhen Lin, Claire Roberts, Xia Wang, Subing Cao, Melody Baddoo, Walter N Moss, Yi Yu, Michael Seddon, Terri Lehman, Scott Tibbetts, Rolf Renne, Yan Dong, Erik K Flemington
Published 2018-08-01

SON drives oncogenic RNA splicing in glioblastoma by regulating PTBP1/PTBP2 switching and RBFOX2 activity

by Jung-Hyun Kim, Kyuho Jeong, Jianfeng Li, James M. Murphy, Lana Vukadin, Joshua K. Stone, Alexander Richard, Johnny Tran, G. Yancey Gillespie, Erik K. Flemington, Robert W. Sobol, Ssang-Teak Steve Lim, Eun-Young Erin Ahn
Published 2021-09-01