Reconstruction of ancestral RNA sequences under multiple structural constraints

by Olivier Tremblay-Savard, Vladimir Reinharz, Jérôme Waldispühl
Published 2016-11-01

Efficient algorithms for probing the RNA mutation landscape.

by Jérôme Waldispühl, Srinivas Devadas, Bonnie Berger, Peter Clote
Published 2008-01-01

Investigating Mutations to Reduce Huntingtin Aggregation by Increasing Htt-N-Terminal Stability and Weakening Interactions with PolyQ Domain

by Mohamed R. Smaoui, Cody Mazza-Anthony, Jérôme Waldispühl
Published 2016-01-01

Exploration of the dynamic properties of protein complexes predicted from spatially constrained protein-protein interaction networks.

by Eric A Yen, Aaron Tsay, Jerome Waldispuhl, Jackie Vogel
Published 2014-05-01

Computational intractability law molds the topology of biological networks

by Ali A. Atiia, Corbin Hopper, Katsumi Inoue, Silvia Vidal, Jérôme Waldispühl
Published 2020-06-01

Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs.

by Antoine Soulé, Vladimir Reinharz, Roman Sarrazin-Gendron, Alain Denise, Jérôme Waldispühl
Published 2021-05-01

Ten simple rules to create a serious game, illustrated with examples from structural biology.

by Marc Baaden, Olivier Delalande, Nicolas Ferey, Samuela Pasquali, Jérôme Waldispühl, Antoine Taly
Published 2018-03-01

Phylo: a citizen science approach for improving multiple sequence alignment.

by Alexander Kawrykow, Gary Roumanis, Alfred Kam, Daniel Kwak, Clarence Leung, Chu Wu, Eleyine Zarour, Phylo players, Luis Sarmenta, Mathieu Blanchette, Jérôme Waldispühl
Published 2012-01-01

A computational framework to create an ensemble of stable amyloid fibrils

by Smaoui, Mohamed
Published 2011

Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in secondary structure

by Reinharz, Vladimir
Published 2013