HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution

by Christopher JF Cameron, Josée Dostie, Mathieu Blanchette
Published 2020-01-01

A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity.

by Philippe Cloutier, Mathieu Lavallée-Adam, Denis Faubert, Mathieu Blanchette, Benoit Coulombe
Published 2013-01-01

LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads

by Christopher J. F. Cameron, Xue Q. D. Wang, Josée Dostie, Mathieu Blanchette
Published 2020-06-01

Computational analysis of whole-genome differential allelic expression data in human.

by James R Wagner, Bing Ge, Dmitry Pokholok, Kevin L Gunderson, Tomi Pastinen, Mathieu Blanchette
Published 2010-01-01

Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning.

by Benoît Guillemette, Alain R Bataille, Nicolas Gévry, Maryse Adam, Mathieu Blanchette, François Robert, Luc Gaudreau
Published 2005-12-01

Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish.

by Emmanuel Mongin, Thomas O Auer, Franck Bourrat, Franziska Gruhl, Ken Dewar, Mathieu Blanchette, Joachim Wittbrodt, Laurence Ettwiller
Published 2011-01-01

2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing

by Xue Qing David Wang, Christopher J. F. Cameron, Denis Paquette, Dana Segal, Reid Warsaba, Mathieu Blanchette, Josée Dostie
Published 2019-02-01

Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora.

by Robert J Williamson, Emily B Josephs, Adrian E Platts, Khaled M Hazzouri, Annabelle Haudry, Mathieu Blanchette, Stephen I Wright
Published 2014-09-01

Inter-dependent Centrosomal Co-localization of the cen and ik2 cis-Natural Antisense mRNAs in Drosophila

by Julie Bergalet, Dhara Patel, Félix Legendre, Catherine Lapointe, Louis Philip Benoit Bouvrette, Ashley Chin, Mathieu Blanchette, Eunjeong Kwon, Eric Lécuyer
Published 2020-03-01

Phylo: a citizen science approach for improving multiple sequence alignment.

by Alexander Kawrykow, Gary Roumanis, Alfred Kam, Daniel Kwak, Clarence Leung, Chu Wu, Eleyine Zarour, Phylo players, Luis Sarmenta, Mathieu Blanchette, Jérôme Waldispühl
Published 2012-01-01

Specific dysregulation of IFNγ production by natural killer cells confers susceptibility to viral infection.

by Nassima Fodil, David Langlais, Peter Moussa, Gregory Allan Boivin, Tania Di Pietrantonio, Irena Radovanovic, Anne Dumaine, Mathieu Blanchette, Erwin Schurr, Philippe Gros, Silvia Marina Vidal
Published 2014-12-01

Positional mapping and candidate gene analysis of the mouse Ccs3 locus that regulates differential susceptibility to carcinogen-induced colorectal cancer.

by Charles Meunier, Lauren Van Der Kraak, Claire Turbide, Normand Groulx, Ingrid Labouba, Pablo Cingolani, Mathieu Blanchette, Garabet Yeretssian, Anne-Marie Mes-Masson, Maya Saleh, Nicole Beauchemin, Philippe Gros
Published 2013-01-01

An N-ethyl-N-nitrosourea (ENU)-induced dominant negative mutation in the JAK3 kinase protects against cerebral malaria.

by Silayuv E Bongfen, Ian-Gael Rodrigue-Gervais, Joanne Berghout, Sabrina Torre, Pablo Cingolani, Sean A Wiltshire, Gabriel A Leiva-Torres, Louis Letourneau, Robert Sladek, Mathieu Blanchette, Mark Lathrop, Marcel A Behr, Samantha Gruenheid, Silvia M Vidal, Maya Saleh, Philippe Gros
Published 2012-01-01

Genome-wide mouse mutagenesis reveals CD45-mediated T cell function as critical in protective immunity to HSV-1.

by Grégory Caignard, Gabriel A Leiva-Torres, Michael Leney-Greene, Benoit Charbonneau, Anne Dumaine, Nassima Fodil-Cornu, Michal Pyzik, Pablo Cingolani, Jeremy Schwartzentruber, Jeremy Dupaul-Chicoine, Huaijian Guo, Maya Saleh, André Veillette, Marc Lathrop, Mathieu Blanchette, Jacek Majewski, Angela Pearson, Silvia M Vidal
Published 2013-09-01

ETS1, ELK1, and ETV4 Transcription Factors Regulate Angiopoietin-1 Signaling and the Angiogenic Response in Endothelial Cells

by Sharon Harel, Sharon Harel, Sharon Harel, Veronica Sanchez, Veronica Sanchez, Veronica Sanchez, Alaa Moamer, Alaa Moamer, Alaa Moamer, Javier E. Sanchez-Galan, Mohammad N. Abid Hussein, Dominique Mayaki, Dominique Mayaki, Dominique Mayaki, Mathieu Blanchette, Sabah N. A. Hussain, Sabah N. A. Hussain, Sabah N. A. Hussain
Published 2021-07-01

RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

by Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J. Nash, Marco Ghilotti, Christopher J.  F. Cameron, Matthew Valentine, Yulia A. Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M. Luscombe, Mathieu Blanchette, Takeya Kasukawa, Michiel de Hoon, Erik Arner, Boris Lenhard, Charles Plessy, Gonçalo Castelo-Branco, Valerio Orlando, Piero Carninci
Published 2020-02-01

Author Correction: RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

by Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J. Nash, Marco Ghilotti, Christopher J. F. Cameron, Matthew Valentine, Yulia A. Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M. Luscombe, Mathieu Blanchette, Takeya Kasukawa, Michiel de Hoon, Erik Arner, Boris Lenhard, Charles Plessy, Gonçalo Castelo-Branco, Valerio Orlando, Piero Carninci
Published 2021-05-01

Transcription factor binding site turnover in mammals

by Reid, Ian Duncan
Published 2007

Motif discovery algorithms incorporating nucleosome positioning information

by Sayad-Rahim, Azin
Published 2010

Large scale identification of transcription factor binding sites in DNA sequences

by Sanchez Galan Frauca, Javier
Published 2010