Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome.

by Jeffrey H Chuang, Hao Li
Published 2004-02-01

Whole-exome sequencing capture kit biases yield false negative mutation calls in TCGA cohorts.

by Victor G Wang, Hyunsoo Kim, Jeffrey H Chuang
Published 2018-01-01

Transcriptional enhancers in protein-coding exons of vertebrate developmental genes.

by Deborah I Ritter, Zhiqiang Dong, Su Guo, Jeffrey H Chuang
Published 2012-01-01

Defects in translation-dependent quality control pathways lead to convergent molecular and neurodevelopmental pathology

by Markus Terrey, Scott I Adamson, Jeffrey H Chuang, Susan L Ackerman
Published 2021-04-01

Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation

by Ryuta Ishimura, Gabor Nagy, Ivan Dotu, Jeffrey H Chuang, Susan L Ackerman
Published 2016-04-01

Integrating chemical footprinting data into RNA secondary structure prediction.

by Kourosh Zarringhalam, Michelle M Meyer, Ivan Dotu, Jeffrey H Chuang, Peter Clote
Published 2012-01-01

Cardiolipin and electron transport chain abnormalities in mouse brain tumor mitochondria: lipidomic evidence supporting the Warburg theory of cancer*

by Michael A. Kiebish, Xianlin Han, Hua Cheng, Jeffrey H. Chuang, Thomas N. Seyfried
Published 2008-12-01

MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms

by Minji Kim, Meizhen Zheng, Simon Zhongyuan Tian, Byoungkoo Lee, Jeffrey H. Chuang, Yijun Ruan
Published 2019-11-01

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors.

by Yingqian Ada Zhan, Charles Gregory Wray, Sandeep Namburi, Spencer T Glantz, Reinhard Laubenbacher, Jeffrey H Chuang
Published 2019-06-01

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.

by Ivan Dotu, Scott I Adamson, Benjamin Coleman, Cyril Fournier, Emma Ricart-Altimiras, Eduardo Eyras, Jeffrey H Chuang
Published 2018-03-01

GTPBP1 resolves paused ribosomes to maintain neuronal homeostasis

by Markus Terrey, Scott I Adamson, Alana L Gibson, Tianda Deng, Ryuta Ishimura, Jeffrey H Chuang, Susan L Ackerman
Published 2020-11-01

Correction: GTPBP1 resolves paused ribosomes to maintain neuronal homeostasis

by Markus Terrey, Scott I Adamson, Alana L Gibson, Tianda Deng, Ryuta Ishimura, Jeffrey H Chuang, Susan L Ackerman
Published 2021-06-01

A mathematical model for the determination of steady-state cardiolipin remodeling mechanisms using lipidomic data.

by Lu Zhang, Robert J A Bell, Michael A Kiebish, Thomas N Seyfried, Xianlin Han, Richard W Gross, Jeffrey H Chuang
Published 2011-01-01

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

by Javad Noorbakhsh, Saman Farahmand, Ali Foroughi pour, Sandeep Namburi, Dennis Caruana, David Rimm, Mohammad Soltanieh-ha, Kourosh Zarringhalam, Jeffrey H. Chuang
Published 2020-12-01

Dynamic simulation of cardiolipin remodeling: greasing the wheels for an interpretative approach to lipidomics[S]

by Michael A. Kiebish, Rob Bell, Kui Yang, Toan Phan, Zhongdan Zhao, William Ames, Thomas N. Seyfried, Richard W. Gross, Jeffrey H. Chuang, Xianlin Han
Published 2010-08-01

CCNE1 amplification is associated with poor prognosis in patients with triple negative breast cancer

by Zi-Ming Zhao, Susan E. Yost, Katherine E. Hutchinson, Sierra Min Li, Yate-Ching Yuan, Javad Noorbakhsh, Zheng Liu, Charles Warden, Radia M. Johnson, Xiwei Wu, Jeffrey H. Chuang, Yuan Yuan
Published 2019-01-01

Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

by Xing Yi Woo, Anuj Srivastava, Joel H. Graber, Vinod Yadav, Vishal Kumar Sarsani, Al Simons, Glen Beane, Stephen Grubb, Guruprasad Ananda, Rangjiao Liu, Grace Stafford, Jeffrey H. Chuang, Susan D. Airhart, R. Krishna Murthy Karuturi, Joshy George, Carol J. Bult
Published 2019-07-01

Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidatesfor targeted treatment

by Hua Sun, Song Cao, R. Jay Mashl, Chia-Kuei Mo, Simone Zaccaria, Michael C. Wendl, Sherri R. Davies, Matthew H. Bailey, Tina M. Primeau, Jeremy Hoog, Jacqueline L. Mudd, Dennis A. Dean, Rajesh Patidar, Li Chen, Matthew A. Wyczalkowski, Reyka G. Jayasinghe, Fernanda Martins Rodrigues, Nadezhda V. Terekhanova, Yize Li, Kian-Huat Lim, Andrea Wang-Gillam, Brian A. Van Tine, Cynthia X. Ma, Rebecca Aft, Katherine C. Fuh, Julie K. Schwarz, Jose P. Zevallos, Sidharth V. Puram, John F. Dipersio, The NCI PDXNet Consortium, Brandi Davis-Dusenbery, Matthew J. Ellis, Michael T. Lewis, Michael A. Davies, Meenhard Herlyn, Bingliang Fang, Jack A. Roth, Alana L. Welm, Bryan E. Welm, Funda Meric-Bernstam, Feng Chen, Ryan C. Fields, Shunqiang Li, Ramaswamy Govindan, James H. Doroshow, Jeffrey A. Moscow, Yvonne A. Evrard, Jeffrey H. Chuang, Benjamin J. Raphael, Li Ding
Published 2021-08-01