Microbial model communities: To understand complexity, harness the power of simplicity

by Johan Bengtsson-Palme
Published 2020-01-01

The diversity of uncharacterized antibiotic resistance genes can be predicted from known gene variants—but not always

by Johan Bengtsson-Palme
Published 2018-07-01

Microbial Community Interactions Are Sensitive to Small Changes in Temperature

by Emil Burman, Emil Burman, Johan Bengtsson-Palme, Johan Bengtsson-Palme
Published 2021-05-01

Concentrations of antibiotics predicted to select for resistant bacteria: Proposed limits for environmental regulation

by Johan Bengtsson-Palme, D.G. Joakim Larsson
Published 2016-01-01

Mumame: a software tool for quantifying gene-specific point-mutations in shotgun metagenomic data

by Shruthi Magesh, Viktor Jonsson, Johan Bengtsson-Palme
Published 2019-09-01

A reference cytochrome c oxidase subunit I database curated for hierarchical classification of arthropod metabarcoding data

by Rodney T. Richardson, Johan Bengtsson-Palme, Mary M. Gardiner, Reed M. Johnson
Published 2018-06-01

The relation between Blastocystis and the intestinal microbiota in Swedish travellers

by Joakim Forsell, Johan Bengtsson-Palme, Martin Angelin, Anders Johansson, Birgitta Evengård, Margareta Granlund
Published 2017-12-01

Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets

by Fredrik Boulund, Fanny Berglund, Carl-Fredrik Flach, Johan Bengtsson-Palme, Nachiket P. Marathe, DG Joakim Larsson, Erik Kristiansson
Published 2017-09-01

Diarrheal bacterial pathogens and multi-resistant enterobacteria in the Choqueyapu River in La Paz, Bolivia.

by Jessica Guzman-Otazo, Lucia Gonzales-Siles, Violeta Poma, Johan Bengtsson-Palme, Kaisa Thorell, Carl-Fredrik Flach, Volga Iñiguez, Åsa Sjöling
Published 2019-01-01

Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data

by Fanny Berglund, Nachiket P. Marathe, Tobias Österlund, Johan Bengtsson-Palme, Stathis Kotsakis, Carl-Fredrik Flach, D G Joakim Larsson, Erik Kristiansson
Published 2017-10-01

Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements

by Katariina Pärnänen, Antti Karkman, Jenni Hultman, Christina Lyra, Johan Bengtsson-Palme, D. G. Joakim Larsson, Samuli Rautava, Erika Isolauri, Seppo Salminen, Himanshu Kumar, Reetta Satokari, Marko Virta
Published 2018-09-01

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

by R. Henrik Nilsson, Leho Tedersoo, Kessy Abarenkov, Martin Ryberg, Erik Kristiansson, Martin Hartmann, Conrad L. Schoch, Johan A. A. Nylander, Johannes Bergsten, Teresita M. Porter, Ari Jumpponen, Parag Vaishampayan, Otso Ovaskainen, Nils Hallenberg, Johan Bengtsson-Palme, K. Martin Eriksson, Karl-Henrik Larsson, Ellen Larsson, Urmas Kõljalg
Published 2012-09-01

Substrate-bound outward-open structure of a Na+-coupled sialic acid symporter reveals a new Na+ site

by Weixiao Y. Wahlgren, Elin Dunevall, Rachel A. North, Aviv Paz, Mariafrancesca Scalise, Paola Bisignano, Johan Bengtsson-Palme, Parveen Goyal, Elin Claesson, Rhawnie Caing-Carlsson, Rebecka Andersson, Konstantinos Beis, Ulf J. Nilsson, Anne Farewell, Lorena Pochini, Cesare Indiveri, Michael Grabe, Renwick C. J. Dobson, Jeff Abramson, S. Ramaswamy, Rosmarie Friemann
Published 2018-05-01

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing techno...

by Alexandre Angers-Loustau, Mauro Petrillo, Johan Bengtsson-Palme, Thomas Berendonk, Burton Blais, Kok-Gan Chan, Teresa M. Coque, Paul Hammer, Stefanie Heß, Dafni M. Kagkli, Carsten Krumbiegel, Val F. Lanza, Jean-Yves Madec, Thierry Naas, Justin O'Grady, Valentina Paracchini, John W.A. Rossen, Etienne Ruppé, Jessica Vamathevan, Vittorio Venturi, Guy Van den Eede
Published 2018-04-01

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing techno...

by Alexandre Angers-Loustau, Mauro Petrillo, Johan Bengtsson-Palme, Thomas Berendonk, Burton Blais, Kok-Gan Chan, Teresa M. Coque, Paul Hammer, Stefanie Heß, Dafni M. Kagkli, Carsten Krumbiegel, Val F. Lanza, Jean-Yves Madec, Thierry Naas, Justin O'Grady, Valentina Paracchini, John W.A. Rossen, Etienne Ruppé, Jessica Vamathevan, Vittorio Venturi, Guy Van den Eede
Published 2018-12-01

Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance

by D.G. Joakim Larsson, Antoine Andremont, Johan Bengtsson-Palme, Kristian Koefoed Brandt, Ana Maria de Roda Husman, Patriq Fagerstedt, Jerker Fick, Carl-Fredrik Flach, William H. Gaze, Makoto Kuroda, Kristian Kvint, Ramanan Laxminarayan, Celia M. Manaia, Kaare Magne Nielsen, Laura Plant, Marie-Cécile Ploy, Carlos Segovia, Pascal Simonet, Kornelia Smalla, Jason Snape, Edward Topp, Arjon J. van Hengel, David W. Verner-Jeffreys, Marko P.J. Virta, Elizabeth M. Wellington, Ann-Sofie Wernersson
Published 2018-08-01

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

by Kessy Abarenkov, Rachel I. Adams, Irinyi Laszlo, Ahto Agan, Elia Ambrosio, Alexandre Antonelli, Mohammad Bahram, Johan Bengtsson-Palme, Gunilla Bok, Patrik Cangren, Victor Coimbra, Claudia Coleine, Claes Gustafsson, Jinhong He, Tobias Hofmann, Erik Kristiansson, Ellen Larsson, Tomas Larsson, Yingkui Liu, Svante Martinsson, Wieland Meyer, Marina Panova, Nuttapon Pombubpa, Camila Ritter, Martin Ryberg, Sten Svantesson, Ruud Scharn, Ola Svensson, Mats Töpel, Martin Unterseher, Cobus Visagie, Christian Wurzbacher, Andy F.S. Taylor, Urmas Kõljalg, Lynn Schriml, R. Henrik Nilsson
Published 2016-09-01

Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK)

by R. Henrik Nilsson, Andy F. S. Taylor, Rachel I. Adams, Christiane Baschien, Johan Bengtsson-Palme, Patrik Cangren, Claudia Coleine, Heide-Marie Daniel, Sydney I. Glassman, Yuuri Hirooka, Laszlo Irinyi, Reda Iršėnaitė, Pedro M. Martin-Sanchez, Wieland Meyer, Seung-Yoon Oh, Jose Paulo Sampaio, Keith A. Seifert, Frantisek Sklenář, Dirk Stubbe, Sung-Oui Suh, Richard Summerbell, Sten Svantesson, Martin Unterseher, Cobus M. Visagie, Michael Weiss, Joyce HC Woudenberg, Christian Wurzbacher, Silke Van den Wyngaert, Neriman Yilmaz, Andrey Yurkov, Urmas Kõljalg, Kessy Abarenkov
Published 2018-01-01