Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter.

by Jason W Sahl, John D Gillece, James M Schupp, Victor G Waddell, Elizabeth M Driebe, David M Engelthaler, Paul Keim
Published 2013-01-01

Analysis of Gut Microbiome Using Explainable Machine Learning Predicts Risk of Diarrhea Associated With Tyrosine Kinase Inhibitor Neratinib: A Pilot Study

by Chi Wah Wong, Susan E. Yost, Jin Sun Lee, John D. Gillece, Megan Folkerts, Lauren Reining, Sarah K. Highlander, Zahra Eftekhari, Joanne Mortimer, Yuan Yuan
Published 2021-03-01

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

by Emilie E. L. Muller, Shaman Narayanasamy, Myriam Zeimes, Cédric C. Laczny, Laura A. Lebrun, Malte Herold, Nathan D. Hicks, John D. Gillece, James M. Schupp, Paul Keim, Paul Wilmes
Published 2017-10-01

Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity.

by John D Gillece, James M Schupp, S Arunmozhi Balajee, Julie Harris, Talima Pearson, Yongpan Yan, Paul Keim, Emilio DeBess, Nicola Marsden-Haug, Ron Wohrle, David M Engelthaler, Shawn R Lockhart
Published 2011-01-01

A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens

by Jason W. Sahl, Talima Pearson, Richard Okinaka, James M. Schupp, John D. Gillece, Hannah Heaton, Dawn Birdsell, Crystal Hepp, Viacheslav Fofanov, Ramón Noseda, Antonio Fasanella, Alex Hoffmaster, David M. Wagner, Paul Keim
Published 2016-09-01

More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes.

by Nathan E Stone, Lindsay C Sidak-Loftis, Jason W Sahl, Adam J Vazquez, Kristin B Wiggins, John D Gillece, Nathan D Hicks, James M Schupp, Joseph D Busch, Paul Keim, David M Wagner
Published 2016-01-01

Francisella tularensis subsp. tularensis Group A.I, United States

by Dawn N. Birdsell, Anders Johansson, Caroline Öhrman, Emily Kaufman, Claudia Molins, Talima Pearson, Miklós Gyuranecz, Amber Naumann, Amy J. Vogler, Kerstin Myrtennäs, Pär Larsson, Mats Forsman, Andreas Sjödin, John D. Gillece, James Schupp, Jeannine M. Petersen, Paul Keim, David M. Wagner
Published 2014-05-01

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.

by Elizabeth M Driebe, Jason W Sahl, Chandler Roe, Jolene R Bowers, James M Schupp, John D Gillece, Erin Kelley, Lance B Price, Talima R Pearson, Crystal M Hepp, Pius M Brzoska, Craig A Cummings, Manohar R Furtado, Paal S Andersen, Marc Stegger, David M Engelthaler, Paul S Keim
Published 2015-01-01

Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis.

by Erin P Price, Derek S Sarovich, Jessica R Webb, Carina M Hall, Sierra A Jaramillo, Jason W Sahl, Mirjam Kaestli, Mark Mayo, Glenda Harrington, Anthony L Baker, Lindsay C Sidak-Loftis, Erik W Settles, Madeline Lummis, James M Schupp, John D Gillece, Apichai Tuanyok, Jeffrey Warner, Joseph D Busch, Paul Keim, Bart J Currie, David M Wagner
Published 2017-09-01

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

by Malte Herold, Susana Martínez Arbas, Shaman Narayanasamy, Abdul R. Sheik, Luise A. K. Kleine-Borgmann, Laura A. Lebrun, Benoît J. Kunath, Hugo Roume, Irina Bessarab, Rohan B. H. Williams, John D. Gillece, James M. Schupp, Paul S. Keim, Christian Jäger, Michael R. Hoopmann, Robert L. Moritz, Yuzhen Ye, Sujun Li, Haixu Tang, Anna Heintz-Buschart, Patrick May, Emilie E. L. Muller, Cedric C. Laczny, Paul Wilmes
Published 2020-10-01