Physical Activity, Immune System, and the Microbiome in Cardiovascular Disease

by Dawn M. Fernandez, Jose C. Clemente, Jose C. Clemente, Chiara Giannarelli, Chiara Giannarelli, Chiara Giannarelli
Published 2018-06-01

Zooming in on Inflammatory Bowel Disease: Microbial and Proteomic Features Associated With IBD in Colonic Microenvironments

by Sabrina Tamburini, PhD, Jose C. Clemente, PhD
Published 2016-09-01

Detecting and phasing minor single-nucleotide variants from long-read sequencing data

by Zhixing Feng, Jose C. Clemente, Brandon Wong, Eric E. Schadt
Published 2021-05-01

Changes in vaginal microbiota following antimicrobial and probiotic therapy

by Jean M. Macklaim, Jose C. Clemente, Rob Knight, Gregory B. Gloor, Gregor Reid
Published 2015-08-01

Effects of the Dietary Protein and Carbohydrate Ratio on Gut Microbiomes in Dogs of Different Body Conditions

by Qinghong Li, Christian L. Lauber, Gail Czarnecki-Maulden, Yuanlong Pan, Steven S. Hannah, Jose C. Clemente
Published 2017-01-01

Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities.

by Sandra Kittelmann, Henning Seedorf, William A Walters, Jose C Clemente, Rob Knight, Jeffrey I Gordon, Peter H Janssen
Published 2013-01-01

Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus.

by Cecilie Dahl, Maggie Stanislawski, Nina Iszatt, Siddhartha Mandal, Catherine Lozupone, Jose C Clemente, Rob Knight, Hein Stigum, Merete Eggesbø
Published 2017-01-01

Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome

by C. Zapka, J. Leff, J. Henley, J. Tittl, E. De Nardo, M. Butler, R. Griggs, N. Fierer, S. Edmonds-Wilson, Jose C. Clemente
Published 2017-03-01

The CCR2/MCP-1 Chemokine Pathway and Lung Adenocarcinoma

by Payal Mittal, Liqing Wang, Tatiana Akimova, Craig A. Leach, Jose C. Clemente, Mathew R. Sender, Yao Chen, Brandon J. Turunen, Wayne W. Hancock
Published 2020-12-01

Bacterial Topography of the Healthy Human Lower Respiratory Tract

by Robert P. Dickson, John R. Erb-Downward, Christine M. Freeman, Lisa McCloskey, Nicole R. Falkowski, Gary B. Huffnagle, Jeffrey L. Curtis, Jose C. Clemente
Published 2017-02-01

Microbiota-driven transcriptional changes in prefrontal cortex override genetic differences in social behavior

by Mar Gacias, Sevasti Gaspari, Patricia-Mae G Santos, Sabrina Tamburini, Monica Andrade, Fan Zhang, Nan Shen, Vladimir Tolstikov, Michael A Kiebish, Jeffrey L Dupree, Venetia Zachariou, Jose C Clemente, Patrizia Casaccia
Published 2016-04-01

Cohabiting family members share microbiota with one another and with their dogs

by Se Jin Song, Christian Lauber, Elizabeth K Costello, Catherine A Lozupone, Gregory Humphrey, Donna Berg-Lyons, J Gregory Caporaso, Dan Knights, Jose C Clemente, Sara Nakielny, Jeffrey I Gordon, Noah Fierer, Rob Knight
Published 2013-04-01

Infant Nasopharyngeal Microbiota Subphenotypes and Early Childhood Lung Function: Evidence from a Rural Ghanaian Pregnancy Cohort

by Kathryn Dubowski, Seyram Kaali, Darby Jack, Rebecca Kyerewaa Dwommoh Prah, Jose C. Clemente, Theresa Tawiah, Mohammed Mujtaba, Louisa Iddrisu, Daniel Carrión, Dennis Gyasi Konadu, Oscar Agyei, Francis Mensah Kornu, Samuel Osei-Owusu, Alison G. Lee, Kwaku Poku Asante
Published 2021-07-01

A dietary intervention to improve the microbiome composition of pregnant women with Crohn's disease and their offspring: The MELODY (Modulating Early Life Microbiome through Dietar...

by Inga Peter, Ana Maldonado-Contreras, Caroline Eisele, Christine Frisard, Shauna Simpson, Nilendra Nair, Alexa Rendon, Kelly Hawkins, Caitlin Cawley, Anketse Debebe, Leonid Tarassishin, Sierra White, Marla Dubinsky, Joanne Stone, Jose C Clemente, Joao Sabino, Joana Torres, Jianzhong Hu, Jean-Frederic Columbel, Barbara Olendzki
Published 2020-06-01

Intestinal Microbiota Is Influenced by Gender and Body Mass Index.

by Carmen Haro, Oriol A Rangel-Zúñiga, Juan F Alcalá-Díaz, Francisco Gómez-Delgado, Pablo Pérez-Martínez, Javier Delgado-Lista, Gracia M Quintana-Navarro, Blanca B Landa, Juan A Navas-Cortés, Manuel Tena-Sempere, José C Clemente, José López-Miranda, Francisco Pérez-Jiménez, Antonio Camargo
Published 2016-01-01

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

by Jai Ram Rideout, Yan He, Jose A. Navas-Molina, William A. Walters, Luke K. Ursell, Sean M. Gibbons, John Chase, Daniel McDonald, Antonio Gonzalez, Adam Robbins-Pianka, Jose C. Clemente, Jack A. Gilbert, Susan M. Huse, Hong-Wei Zhou, Rob Knight, J. Gregory Caporaso
Published 2014-08-01

Traditional Farming Lifestyle in Old Older Mennonites Modulates Human Milk Composition

by Antti E. Seppo, Rakin Choudhury, Catherine Pizzarello, Rohith Palli, Sade Fridy, Puja Sood Rajani, Jessica Stern, Camille Martina, Chloe Yonemitsu, Lars Bode, Lars Bode, Kevin Bu, Sabrina Tamburini, Enrica Piras, David S. Wallach, Maria Allen, R. John Looney, Jose C. Clemente, Juilee Thakar, Kirsi M. Järvinen, Kirsi M. Järvinen
Published 2021-10-01

Anaerobe-enriched gut microbiota predicts pro-inflammatory responses in pulmonary tuberculosis

by Charissa C. Naidoo, Georgina R. Nyawo, Imran Sulaiman, Benjamin G. Wu, Carolin T. Turner, Kevin Bu, Zaida Palmer, Yonghua Li, Byron W.P. Reeve, Suventha Moodley, Jennifer G. Jackson, Jason Limberis, Andreas H. Diacon, Paul D. van Helden, Jose C. Clemente, Robin M. Warren, Mahdad Noursadeghi, Leopoldo N. Segal, Grant Theron
Published 2021-05-01

Gut microbiota density influences host physiology and is shaped by host and microbial factors

by Eduardo J Contijoch, Graham J Britton, Chao Yang, Ilaria Mogno, Zhihua Li, Ruby Ng, Sean R Llewellyn, Sheela Hira, Crystal Johnson, Keren M Rabinowitz, Revital Barkan, Iris Dotan, Robert P Hirten, Shih-Chen Fu, Yuying Luo, Nancy Yang, Tramy Luong, Philippe R Labrias, Sergio Lira, Inga Peter, Ari Grinspan, Jose C Clemente, Roman Kosoy, Seunghee Kim-Schulze, Xiaochen Qin, Anabella Castillo, Amanda Hurley, Ashish Atreja, Jason Rogers, Farah Fasihuddin, Merjona Saliaj, Amy Nolan, Pamela Reyes-Mercedes, Carina Rodriguez, Sarah Aly, Kenneth Santa-Cruz, Lauren Peters, Mayte Suárez-Fariñas, Ruiqi Huang, Ke Hao, Jun Zhu, Bin Zhang, Bojan Losic, Haritz Irizar, Won-Min Song, Antonio Di Narzo, Wenhui Wang, Benjamin L Cohen, Christopher DiMaio, David Greenwald, Steven Itzkowitz, Aimee Lucas, James Marion, Elana Maser, Ryan Ungaro, Steven Naymagon, Joshua Novak, Brijen Shah, Thomas Ullman, Peter Rubin, James George, Peter Legnani, Shannon E Telesco, Joshua R Friedman, Carrie Brodmerkel, Scott Plevy, Judy H Cho, Jean-Frederic Colombel, Eric E Schadt, Carmen Argmann, Marla Dubinsky, Andrew Kasarskis, Bruce Sands, Jeremiah J Faith
Published 2019-01-01