Synonymous Dinucleotide Usage: A Codon-Aware Metric for Quantifying Dinucleotide Representation in Viruses

by Spyros Lytras, Joseph Hughes
Published 2020-04-01

High-Quality Cloud Masking of Landsat 8 Imagery Using Convolutional Neural Networks

by M. Joseph Hughes, Robert Kennedy
Published 2019-11-01

Automated Detection of Cloud and Cloud Shadow in Single-Date Landsat Imagery Using Neural Networks and Spatial Post-Processing

by M. Joseph Hughes, Daniel J. Hayes
Published 2014-05-01

Patch-Based Forest Change Detection from Landsat Time Series

by M. Joseph Hughes, S. Douglas Kaylor, Daniel J. Hayes
Published 2017-05-01

Quasispecies Changes with Distinctive Point Mutations in the Hepatitis C Virus Internal Ribosome Entry Site (IRES) Derived from PBMCs and Plasma

by Luca Mercuri, Emma C. Thomson, Joseph Hughes, Peter Karayiannis
Published 2018-01-01

Phylodynamic analysis of porcine circovirus type 2: Methodological approach and datasets

by Giovanni Franzo, Martì Cortey, Joaquim Segalés, Joseph Hughes, Michele Drigo
Published 2016-09-01

GLUE: a flexible software system for virus sequence data

by Joshua B. Singer, Emma C. Thomson, John McLauchlan, Joseph Hughes, Robert J. Gifford
Published 2018-12-01

X-Ray and CT Scan Based Prediction of Best Fit Tracheostomy Tube—A Pilot Study

by Mel Corbett, Isobel Hughes, John O’Shea, Matthew G. Davey, Jane Savage, Joseph Hughes, Fintan Wallis
Published 2020-07-01

Widespread Reassortment Shapes the Evolution and Epidemiology of Bluetongue Virus following European Invasion.

by Kyriaki Nomikou, Joseph Hughes, Rachael Wash, Paul Kellam, Emmanuel Breard, Stéphan Zientara, Massimo Palmarini, Roman Biek, Peter Mertens
Published 2015-08-01

Metaviromics Reveals Unknown Viral Diversity in the Biting Midge <i>Culicoides impunctatus</i>

by Sejal Modha, Joseph Hughes, Giovanni Bianco, Heather M. Ferguson, Barbara Helm, Lily Tong, Gavin S. Wilkie, Alain Kohl, Esther Schnettler
Published 2019-09-01

Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses.

by Andrew E Shaw, Joseph Hughes, Quan Gu, Abdelkader Behdenna, Joshua B Singer, Tristan Dennis, Richard J Orton, Mariana Varela, Robert J Gifford, Sam J Wilson, Massimo Palmarini
Published 2017-12-01

Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks.

by Joseph Hughes, Richard C Allen, Marc Baguelin, Katie Hampson, Gregory J Baillie, Debra Elton, J Richard Newton, Paul Kellam, James L N Wood, Edward C Holmes, Pablo R Murcia
Published 2012-12-01

Genetic imprint of vaccination on simian/human immunodeficiency virus type 1 transmitted viral genomes in rhesus macaques.

by Mariana Varela, Ernst Verschoor, Rachel P J Lai, Joseph Hughes, Petra Mooj, Trevelyan J McKinley, Timothy J Fitzmaurice, Lisa Landskron, Brian J Willett, Simon D W Frost, Willy M Bogers, Jonathan L Heeney
Published 2013-01-01

Integrating Health Research into Disaster Response: The New NIH Disaster Research Response Program

by Aubrey Miller, Kevin Yeskey, Stavros Garantziotis, Stacey Arnesen, April Bennett, Liam O’Fallon, Claudia Thompson, Les Reinlib, Scott Masten, James Remington, Cindy Love, Steve Ramsey, Richard Rosselli, Betsy Galluzzo, Joy Lee, Richard Kwok, Joseph Hughes
Published 2016-07-01

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs.

by Pablo R Murcia, Joseph Hughes, Patrizia Battista, Lucy Lloyd, Gregory J Baillie, Ricardo H Ramirez-Gonzalez, Doug Ormond, Karen Oliver, Debra Elton, Jennifer A Mumford, Mario Caccamo, Paul Kellam, Bryan T Grenfell, Edward C Holmes, James L N Wood
Published 2012-01-01

Development of reverse genetics systems and investigation of host response antagonism and reassortment potential for Cache Valley and Kairi viruses, two emerging orthobunyaviruses...

by James I Dunlop, Agnieszka M Szemiel, Aitor Navarro, Gavin S Wilkie, Lily Tong, Sejal Modha, Daniel Mair, Vattipally B Sreenu, Ana Da Silva Filipe, Ping Li, Yan-Jang S Huang, Benjamin Brennan, Joseph Hughes, Dana L Vanlandingham, Stephen Higgs, Richard M Elliott, Alain Kohl
Published 2018-10-01

Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds.

by Henan Zhu, Batchuluun Damdinjav, Gaelle Gonzalez, Livia Victoria Patrono, Humberto Ramirez-Mendoza, Julien A R Amat, Joanna Crispell, Yasmin Amy Parr, Toni-Ann Hammond, Enkhtuvshin Shiilegdamba, Y H Connie Leung, Malik Peiris, John F Marshall, Joseph Hughes, Martin Gilbert, Pablo R Murcia
Published 2019-02-01

Investigation of Amphibian Mortality Events in Wildlife Reveals an On-Going Ranavirus Epidemic in the North of the Netherlands.

by Jolianne M Rijks, Bernardo Saucedo, Annemarieke Spitzen-van der Sluijs, Gavin S Wilkie, Alphons J A M van Asten, Jan van den Broek, Roschong Boonyarittichaikij, Marisca Stege, Fleur van der Sterren, An Martel, Frank Pasmans, Joseph Hughes, Andrea Gröne, Steven J van Beurden, Marja J L Kik
Published 2016-01-01

Interpreting Viral Deep Sequencing Data with GLUE

by Joshua B. Singer, Emma C. Thomson, Joseph Hughes, Elihu Aranday-Cortes, John McLauchlan, Ana da Silva Filipe, Lily Tong, Carmen F. Manso, Robert J. Gifford, David L. Robertson, Eleanor Barnes, M. Azim Ansari, Jean L. Mbisa, David F. Bibby, Daniel Bradshaw, David Smith
Published 2019-04-01

Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data

by Oliver Stirrup, Joseph Hughes, Matthew Parker, David G Partridge, James G Shepherd, James Blackstone, Francesc Coll, Alexander Keeley, Benjamin B Lindsey, Aleksandra Marek, Christine Peters, Joshua B Singer, The COVID-19 Genomics UK (COG-UK) consortium, Asif Tamuri, Thushan I de Silva, Emma C Thomson, Judith Breuer
Published 2021-06-01