The Loss of Landscape Ecological Functionality in the Barcelona Province (1956–2009): Could Land-Use History Involve a Legacy for Current Biodiversity?

by Enric Tello, Joan Marull, Roc Padró, Claudio Cattaneo, Francesc Coll
Published 2020-03-01

Local Persistence of Novel MRSA Lineage after Hospital Ward Outbreak, Cambridge, UK, 2011–2013

by Michelle S. Toleman, Sandra Reuter, Francesc Coll, Ewan M. Harrison, Sharon J. Peacock
Published 2016-09-01

Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets [version 2; peer review: 2 approved, 1 approved w...

by Quentin J. Leclerc, Nichola R. Naylor, Alexander M. Aiken, Francesc Coll, Gwenan M. Knight
Published 2020-06-01

Imputation-based population genetics analysis of Plasmodium falciparum malaria parasites.

by Hanif Samad, Francesc Coll, Mark D Preston, Harold Ocholla, Rick M Fairhurst, Taane G Clark
Published 2015-04-01

Land abandonment, landscape, and biodiversity: questioning the restorative character of the forest transition in the Mediterranean

by Iago Otero, Joan Marull, Enric Tello, Giovanna L. Diana, Manel Pons, Francesc Coll, Martí Boada
Published 2015-06-01

Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England

by Ewan M. Harrison, Francesc Coll, Michelle S. Toleman, Beth Blane, Nicholas M. Brown, M. Estee Török, Julian Parkhill, Sharon J. Peacock
Published 2017-08-01

The draft genome of Mycobacterium aurum , a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae

by Jody Phelan, Arundhati Maitra, Ruth McNerney, Mridul Nair, Antima Gupta, Francesc Coll, Arnab Pain, Sanjib Bhakta, Taane G Clark
Published 2015-01-01

Transient Silencing of Antibiotic Resistance by Mutation Represents a Significant Potential Source of Unanticipated Therapeutic Failure

by Louise Kime, Christopher P. Randall, Frank I. Banda, Francesc Coll, John Wright, Joseph Richardson, Joanna Empel, Julian Parkhill, Alex J. O’Neill
Published 2019-10-01

Whole genome sequencing-based characterization of extensively drug resistant (XDR) strains of Mycobacterium tuberculosis from Pakistan

by Zahra Hasan, Asho Ali, Ruth McNerney, Kim Mallard, Grant Hill-Cawthorne, Francesc Coll, Mridul Nair, Arnab Pain, Taane G Clark, Rumina Hasan
Published 2015-01-01

Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan.

by Asho Ali, Zahra Hasan, Ruth McNerney, Kim Mallard, Grant Hill-Cawthorne, Francesc Coll, Mridul Nair, Arnab Pain, Taane G Clark, Rumina Hasan
Published 2015-01-01

Characterization of genomic variations in SNPs of PE_PGRS genes reveals deletions and insertions in extensively drug resistant (XDR) M. tuberculosis strains from Pakistan

by Akbar Kanji, Zahra Hasan, Asho Ali, Ruth McNerney, Kim Mallard, Francesc Coll, Grant Hill-Cawthorne, Mridul Nair, Taane G Clark, Ambreen Zaver, Sana Jafri, Rumina Hasan
Published 2015-01-01

Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

by Dorota Jamrozy, Francesc Coll, Alison E. Mather, Simon R. Harris, Ewan M. Harrison, Alasdair MacGowan, Andreas Karas, Tony Elston, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Published 2017-09-01

Characterization of genomic variations in SNPs of PE_PGRS genes reveals deletions and insertions in extensively drug resistant (XDR) M. tuberculosis strains from Pakistan

by Akbar Kanji, Zahra Hasan, Asho Ali, Ruth McNerney, Kim Mallard, Francesc Coll, Grant Hill-Cawthorne, Arnab Pain, Mridul Nair, Taane G Clark, Ambreen Zaver, Sana Jafri, Rumina Hasan
Published 2015-01-01

Genomic diversity of drug-resistant Mycobacterium tuberculosis isolates in Lisbon Portugal: Towards tuberculosis genomic epidemiology

by João Perdigão, Hugo Silva, Diana Machado, Rita Macedo, Fernando Maltez, Carla Silva, Luisa Jordao, Isabel Couto, Kim Mallard, Francesc Coll, Grant A Hill-Cawthorne, Ruth McNerney, Arnab Pain, Taane G Clark, Miguel Viveiros, Isabel Portugal
Published 2015-01-01

One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock

by Catherine Ludden, Kathy E. Raven, Dorota Jamrozy, Theodore Gouliouris, Beth Blane, Francesc Coll, Marcus de Goffau, Plamena Naydenova, Carolyne Horner, Juan Hernandez-Garcia, Paul Wood, Nazreen Hadjirin, Milorad Radakovic, Nicholas M. Brown, Mark Holmes, Julian Parkhill, Sharon J. Peacock
Published 2019-01-01

Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis

by Francesc Coll, PhD, Kathy E Raven, PhD, Gwenan M Knight, PhD, Beth Blane, BSc, Ewan M Harrison, PhD, Danielle Leek, BSc, David A Enoch, FRCPath, Nicholas M Brown, MD, Julian Parkhill, PhD, Sharon J Peacock, PhD
Published 2020-12-01

Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing.

by Taane G Clark, Kim Mallard, Francesc Coll, Mark Preston, Samuel Assefa, David Harris, Sam Ogwang, Francis Mumbowa, Bruce Kirenga, Denise M O'Sullivan, Alphonse Okwera, Kathleen D Eisenach, Moses Joloba, Stephen D Bentley, Jerrold J Ellner, Julian Parkhill, Edward C Jones-López, Ruth McNerney
Published 2013-01-01

Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data

by Oliver Stirrup, Joseph Hughes, Matthew Parker, David G Partridge, James G Shepherd, James Blackstone, Francesc Coll, Alexander Keeley, Benjamin B Lindsey, Aleksandra Marek, Christine Peters, Joshua B Singer, The COVID-19 Genomics UK (COG-UK) consortium, Asif Tamuri, Thushan I de Silva, Emma C Thomson, Judith Breuer
Published 2021-06-01

Mathematical modelling for antibiotic resistance control policy: do we know enough?

by Gwenan M. Knight, Nicholas G. Davies, Caroline Colijn, Francesc Coll, Tjibbe Donker, Danna R. Gifford, Rebecca E. Glover, Mark Jit, Elizabeth Klemm, Sonja Lehtinen, Jodi A. Lindsay, Marc Lipsitch, Martin J. Llewelyn, Ana L. P. Mateus, Julie V. Robotham, Mike Sharland, Dov Stekel, Laith Yakob, Katherine E. Atkins
Published 2019-11-01

Defining nosocomial transmission of Escherichia coli and antimicrobial resistance genes: a genomic surveillance study

by Catherine Ludden, PhD, Francesc Coll, PhD, Theodore Gouliouris, PhD, Olivier Restif, PhD, Beth Blane, BSc, Grace A Blackwell, PhD, Narender Kumar, PhD, Plamena Naydenova, BSc, Charles Crawley, FRCPath, Nicholas M Brown, FRCPath, Julian Parkhill, ProfPhD, Sharon J Peacock, ProfFRCPath
Published 2021-09-01