Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing

by Doratha A. Byrd, Rashmi Sinha, Kristi L. Hoffman, Jun Chen, Xing Hua, Jianxin Shi, Nicholas Chia, Joseph Petrosino, Emily Vogtmann
Published 2020-02-01

Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC

by Lee Call, Barbara Stoll, Berthe Oosterloo, Nadim Ajami, Fariha Sheikh, Anja Wittke, Rosaline Waworuntu, Brian Berg, Joseph Petrosino, Oluyinka Olutoye, Douglas Burrin
Published 2018-06-01

Young versus aged microbiota transplants to germ-free mice: increased short-chain fatty acids and improved cognitive performance

by Juneyoung Lee, Venugopal R. Venna, David J. Durgan, Huanan Shi, Jacob Hudobenko, Nagireddy Putluri, Joseph Petrosino, Louise D. McCullough, Robert M. Bryan
Published 2020-11-01

Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display.

by Haichun Gao, Donna Pattison, Tingfen Yan, Dawn M Klingeman, Xiaohu Wang, Joseph Petrosino, Lisa Hemphill, Xiufeng Wan, Adam B Leaphart, George M Weinstock, Timothy Palzkill, Jizhong Zhou
Published 2008-01-01

A type VII secretion system of Streptococcus gallolyticus subsp. gallolyticus contributes to gut colonization and the development of colon tumors.

by John Culver Taylor, Xinsheng Gao, Juan Xu, Michael Holder, Joseph Petrosino, Ritesh Kumar, Wen Liu, Magnus Höök, Chris Mackenzie, Andrew Hillhouse, Wesley Brashear, Maria Patricia Nunez, Yi Xu
Published 2021-01-01

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy.

by Kjersti Aagaard, Kevin Riehle, Jun Ma, Nicola Segata, Toni-Ann Mistretta, Cristian Coarfa, Sabeen Raza, Sean Rosenbaum, Ignatia Van den Veyver, Aleksandar Milosavljevic, Dirk Gevers, Curtis Huttenhower, Joseph Petrosino, James Versalovic
Published 2012-01-01

Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment.

by Lara Bull-Otterson, Wenke Feng, Irina Kirpich, Yuhua Wang, Xiang Qin, Yanlong Liu, Leila Gobejishvili, Swati Joshi-Barve, Tulin Ayvaz, Joseph Petrosino, Maiying Kong, David Barker, Craig McClain, Shirish Barve
Published 2013-01-01

Decrease in acetyl-CoA pathway utilizing butyrate-producing bacteria is a key pathogenic feature of alcohol-induced functional gut microbial dysbiosis and development of liver dise...

by Richa Singhal, Hridgandh Donde, Smita Ghare, Kendall Stocke, Jingwein Zhang, Manicka Vadhanam, Sreelatha Reddy, Leila Gobejishvili, Paula Chilton, Swati Joshi-Barve, Wenke Feng, Craig McClain, Kristi Hoffman, Joseph Petrosino, Marius Vital, Shirish Barve
Published 2021-01-01

Transmission event of SARS-CoV-2 delta variant reveals multiple vaccine breakthrough infections

by Timothy Farinholt, Harsha Doddapaneni, Xiang Qin, Vipin Menon, Qingchang Meng, Ginger Metcalf, Hsu Chao, Marie-Claude Gingras, Vasanthi Avadhanula, Paige Farinholt, Charu Agrawal, Donna M. Muzny, Pedro A. Piedra, Richard A. Gibbs, Joseph Petrosino
Published 2021-10-01

Enteroaggregative E. coli Adherence to Human Heparan Sulfate Proteoglycans Drives Segment and Host Specific Responses to Infection.

by Anubama Rajan, Matthew J Robertson, Hannah E Carter, Nina M Poole, Justin R Clark, Sabrina I Green, Zachary K Criss, Boyang Zhao, Umesh Karandikar, Yikun Xing, Mar Margalef-Català, Nikhil Jain, Reid L Wilson, Fan Bai, Joseph M Hyser, Joseph Petrosino, Noah F Shroyer, Sarah E Blutt, Cristian Coarfa, Xuezheng Song, Bv Venkataram Prasad, Manuel R Amieva, Jane Grande-Allen, Mary K Estes, Pablo C Okhuysen, Anthony W Maresso
Published 2020-09-01