Advances in Visualization Tools for Phylogenomic and Phylodynamic Studies of Viral Diseases

by Kristof Theys, Philippe Lemey, Anne-Mieke Vandamme, Guy Baele
Published 2019-08-01

Correction: Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV.

by Kristof Theys, Alison F Feder, Maoz Gelbart, Marion Hartl, Adi Stern, Pleuni S Pennings
Published 2018-12-01

Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV.

by Kristof Theys, Alison F Feder, Maoz Gelbart, Marion Hartl, Adi Stern, Pleuni S Pennings
Published 2018-06-01

Genetic Diversity and Selective Pressure in Hepatitis C Virus Genotypes 1–6: Significance for Direct-Acting Antiviral Treatment and Drug Resistance

by Lize Cuypers, Guangdi Li, Pieter Libin, Supinya Piampongsant, Anne-Mieke Vandamme, Kristof Theys
Published 2015-09-01

Characterization of Nucleoside Reverse Transcriptase Inhibitor-Associated Mutations in the RNase H Region of HIV-1 Subtype C Infected Individuals

by Sinaye Ngcapu, Kristof Theys, Pieter Libin, Vincent C. Marconi, Henry Sunpath, Thumbi Ndung’u, Michelle L. Gordon
Published 2017-11-01

Zika genomics urgently need standardized and curated reference sequences.

by Kristof Theys, Pieter Libin, Kai Dallmeier, Andrea-Clemencia Pineda-Peña, Anne-Mieke Vandamme, Lize Cuypers, Ana B Abecasis
Published 2017-09-01

HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012

by Andrea-Clemencia Pineda-Peña, Kristof Theys, Dora C. Stylianou, Ioannis Demetriades, SPREAD/ESAR Program, Ana B. Abecasis, Leondios G. Kostrikis
Published 2018-01-01

Molecular epidemiology of HIV-1 infection in Cyprus: onward transmission is predominantly driven by young adults

by Andrea-Clemencia Pineda-Peña, Kristof Theys, Johana Hezka, Ioanna Kousiappa, Maria Andreou, Ioannis Demetriades, Ana Barroso Abecasis, Leondios G. Kostrikis
Published 2016-05-01

Time to Harmonize Dengue Nomenclature and Classification

by Lize Cuypers, Pieter J. K. Libin, Peter Simmonds, Ann Nowé, Jorge Muñoz-Jordán, Luiz Carlos Junior Alcantara, Anne-Mieke Vandamme, Gilberto A. Santiago, Kristof Theys
Published 2018-10-01

Drivers of HIV-1 transmission: The Portuguese case.

by Andrea-Clemencia Pineda-Peña, Marta Pingarilho, Guangdi Li, Bram Vrancken, Pieter Libin, Perpétua Gomes, Ricardo Jorge Camacho, Kristof Theys, Ana Barroso Abecasis, Portuguese HIV-1 Resistance Study Group
Published 2019-01-01

Epidemic dispersion of HIV and HCV in a population of co-infected Romanian injecting drug users.

by Simona Paraschiv, Leontina Banica, Ionelia Nicolae, Iulia Niculescu, Adrian Abagiu, Raluca Jipa, Andrea-Clemencia Pineda-Peña, Marta Pingarilho, Emil Neaga, Kristof Theys, Pieter Libin, Dan Otelea, Ana Abecasis
Published 2017-01-01

Increasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations<br />

by Marta Pingarilho, Victor Pimentel, Isabel Diogo, Sandra Fernandes, Mafalda Miranda, Andrea Pineda-Pena, Pieter Libin, Kristof Theys, M. Rosário O. Martins, Anne-Mieke Vandamme, Ricardo Camacho, Perpétua Gomes, Ana Abecasis
Published 2020-10-01

A genetic IFN/STAT1/FAS axis determines CD4 T stem cell memory levels and apoptosis in healthy controls and Adult T-cell Leukemia patients

by Ricardo Khouri, Gilvanéia Silva-Santos, Tim Dierckx, Soraya Maria Menezes, Daniele Decanine, Kristof Theys, Aline Clara Silva, Lourdes Farré, Achiléa Bittencourt, Massimo Mangino, Mario Roederer, Anne-Mieke Vandamme, Johan Van Weyenbergh
Published 2018-05-01

CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba

by Vivian Kouri, Ricardo Khouri, Yoan Alemán‬, Yeissel Abrahantes, Jurgen Vercauteren, Andrea-Clemencia Pineda-Peña, Kristof Theys, Sarah Megens, Michel Moutschen, Nico Pfeifer, Johan Van Weyenbergh, Ana B. Pérez, Jorge Pérez, Lissette Pérez, Kristel Van Laethem, Anne-Mieke Vandamme
Published 2015-03-01

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.

by Vagner Fonseca, Pieter J K Libin, Kristof Theys, Nuno R Faria, Marcio R T Nunes, Maria I Restovic, Murilo Freire, Marta Giovanetti, Lize Cuypers, Ann Nowé, Ana Abecasis, Koen Deforche, Gilberto A Santiago, Isadora C de Siqueira, Emmanuel J San, Kaliane C B Machado, Vasco Azevedo, Ana Maria Bispo-de Filippis, Rivaldo Venâncio da Cunha, Oliver G Pybus, Anne-Mieke Vandamme, Luiz C J Alcantara, Tulio de Oliveira
Published 2019-05-01