The Sputum Microbiome in Pulmonary Tuberculosis and Its Association With Disease Manifestations: A Cross-Sectional Study

by Monica R. Ticlla, Monica R. Ticlla, Monica R. Ticlla, Jerry Hella, Jerry Hella, Hellen Hiza, Mohamed Sasamalo, Francis Mhimbira, Liliana K. Rutaihwa, Liliana K. Rutaihwa, Liliana K. Rutaihwa, Sara Droz, Sarah Schaller, Klaus Reither, Klaus Reither, Markus Hilty, Inaki Comas, Christian Beisel, Christoph D. Schmid, Christoph D. Schmid, Christoph D. Schmid, Lukas Fenner, Lukas Fenner, Lukas Fenner, Lukas Fenner, Sebastien Gagneux, Sebastien Gagneux
Published 2021-08-01

Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity

by Fabrizio Menardo, Chloé Loiseau, Daniela Brites, Mireia Coscolla, Sebastian M. Gygli, Liliana K. Rutaihwa, Andrej Trauner, Christian Beisel, Sonia Borrell, Sebastien Gagneux
Published 2018-05-01

Multiple Introductions of Mycobacterium tuberculosis Lineage 2–Beijing Into Africa Over Centuries

by Liliana K. Rutaihwa, Liliana K. Rutaihwa, Liliana K. Rutaihwa, Fabrizio Menardo, Fabrizio Menardo, David Stucki, David Stucki, Sebastian M. Gygli, Sebastian M. Gygli, Serej D. Ley, Serej D. Ley, Serej D. Ley, Serej D. Ley, Bijaya Malla, Bijaya Malla, Bijaya Malla, Julia Feldmann, Julia Feldmann, Sonia Borrell, Sonia Borrell, Christian Beisel, Kerren Middelkoop, Kerren Middelkoop, E. Jane Carter, E. Jane Carter, Lameck Diero, Marie Ballif, Levan Jugheli, Levan Jugheli, Klaus Reither, Klaus Reither, Lukas Fenner, Lukas Fenner, Lukas Fenner, Daniela Brites, Daniela Brites, Sebastien Gagneux, Sebastien Gagneux
Published 2019-04-01

Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania.

by Liliana K Rutaihwa, Mohamed Sasamalo, Aladino Jaleco, Jerry Hella, Ally Kingazi, Lujeko Kamwela, Amri Kingalu, Bryceson Malewo, Raymond Shirima, Anna Doetsch, Julia Feldmann, Miriam Reinhard, Sonia Borrell, Daniela Brites, Klaus Reither, Basra Doulla, Lukas Fenner, Sebastien Gagneux
Published 2019-01-01

Distinct clinical characteristics and helminth co-infections in adult tuberculosis patients from urban compared to rural Tanzania

by George Sikalengo, Jerry Hella, Francis Mhimbira, Liliana K. Rutaihwa, Farida Bani, Robert Ndege, Mohamed Sasamalo, Lujeko Kamwela, Khadija Said, Grace Mhalu, Yeromin Mlacha, Christoph Hatz, Stefanie Knopp, Sébastien Gagneux, Klaus Reither, Jürg Utzinger, Marcel Tanner, Emilio Letang, Maja Weisser, Lukas Fenner
Published 2018-03-01

Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim [version 2; peer review: 3 approved]

by Fabrizio Menardo, Liliana K. Rutaihwa, Michaela Zwyer, Sonia Borrell, Iñaki Comas, Emilyn Costa Conceição, Mireia Coscolla, Helen Cox, Moses Joloba, Horng-Yunn Dou, Julia Feldmann, Lukas Fenner, Janet Fyfe, Qian Gao, Darío García de Viedma, Alberto L. Garcia-Basteiro, Sebastian M. Gygli, Jerry Hella, Hellen Hiza, Levan Jugheli, Lujeko Kamwela, Midori Kato-Maeda, Qingyun Liu, Serej D. Ley, Chloe Loiseau, Surakameth Mahasirimongkol, Bijaya Malla, Prasit Palittapongarnpim, Niaina Rakotosamimanana, Voahangy Rasolofo, Miriam Reinhard, Klaus Reither, Mohamed Sasamalo, Rafael Silva Duarte, Christophe Sola, Philip Suffys, Karla Valeria Batista Lima, Dorothy Yeboah-Manu, Christian Beisel, Daniela Brites, Sebastien Gagneux
Published 2021-03-01

Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim [version 1; peer review: 2 approved]

by Fabrizio Menardo, Liliana K. Rutaihwa, Michaela Zwyer, Sonia Borrell, Iñaki Comas, Emilyn Costa Conceição, Mireia Coscolla, Helen Cox, Moses Joloba, Horng-Yunn Dou, Julia Feldmann, Lukas Fenner, Janet Fyfe, Qian Gao, Darío García de Viedma, Alberto L. Garcia-Basteiro, Sebastian M. Gygli, Jerry Hella, Hellen Hiza, Levan Jugheli, Lujeko Kamwela, Midori Kato-Maeda, Qingyun Liu, Serej D. Ley, Chloe Loiseau, Surakameth Mahasirimongkol, Bijaya Malla, Prasit Palittapongarnpim, Niaina Rakotosamimanana, Voahangy Rasolofo, Miriam Reinhard, Klaus Reither, Mohamed Sasamalo, Rafael Silva Duarte, Christophe Sola, Philip Suffys, Karla Valeria Batista Lima, Dorothy Yeboah-Manu, Christian Beisel, Daniela Brites, Sebastien Gagneux
Published 2021-02-01