Read length versus depth of coverage for viral quasispecies reconstruction.

by Osvaldo Zagordi, Martin Däumer, Christian Beisel, Niko Beerenwinkel
Published 2012-01-01

High-Resolution Profiling of Drosophila Replication Start Sites Reveals a DNA Shape and Chromatin Signature of Metazoan Origins

by Federico Comoglio, Tommy Schlumpf, Virginia Schmid, Remo Rohs, Christian Beisel, Renato Paro
Published 2015-05-01

RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes

by Jeremias N. Brand, R. Axel W. Wiberg, Robert Pjeta, Philip Bertemes, Christian Beisel, Peter Ladurner, Lukas Schärer
Published 2020-07-01

Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping

by Simon Höllerer, Laetitia Papaxanthos, Anja Cathrin Gumpinger, Katrin Fischer, Christian Beisel, Karsten Borgwardt, Yaakov Benenson, Markus Jeschek
Published 2020-07-01

Collection and preprocessing of fine needle aspirate patient samples for single cell profiling and data analysis

by Aizhan Tastanova, Egle Ramelyte, Zsolt Balázs, Ulrike Menzel, Christian Beisel, Michael Krauthammer, Reinhard Dummer, Mitchell Paul Levesque
Published 2021-06-01

A switch in transcription and cell fate governs the onset of an epigenetically-deregulated tumor in Drosophila

by Joana Torres, Remo Monti, Ariane L Moore, Makiko Seimiya, Yanrui Jiang, Niko Beerenwinkel, Christian Beisel, Jorge V Beira, Renato Paro
Published 2018-03-01

A High-Density Map for Navigating the Human Polycomb Complexome

by Simon Hauri, Federico Comoglio, Makiko Seimiya, Moritz Gerstung, Timo Glatter, Klaus Hansen, Ruedi Aebersold, Renato Paro, Matthias Gstaiger, Christian Beisel
Published 2016-10-01

Spatial Distribution of Private Gene Mutations in Clear Cell Renal Cell Carcinoma

by Ariane L. Moore, Aashil A. Batavia, Jack Kuipers, Jochen Singer, Elodie Burcklen, Peter Schraml, Christian Beisel, Holger Moch, Niko Beerenwinkel
Published 2021-04-01

High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm.

by Philip Wolff, Isabelle Weinhofer, Jonathan Seguin, Pawel Roszak, Christian Beisel, Mark T A Donoghue, Charles Spillane, Magnus Nordborg, Marc Rehmsmeier, Claudia Köhler
Published 2011-06-01

Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity

by Fabrizio Menardo, Chloé Loiseau, Daniela Brites, Mireia Coscolla, Sebastian M. Gygli, Liliana K. Rutaihwa, Andrej Trauner, Christian Beisel, Sonia Borrell, Sebastien Gagneux
Published 2018-05-01

Expression and Mutation Patterns of PBRM1, BAP1 and SETD2 Mirror Specific Evolutionary Subtypes in Clear Cell Renal Cell Carcinoma

by Svenja Bihr, Riuko Ohashi, Ariane L. Moore, Jan H. Rüschoff, Christian Beisel, Thomas Hermanns, Axel Mischo, Claudia Corrò, Jörg Beyer, Niko Beerenwinkel, Holger Moch, Peter Schraml
Published 2019-02-01

Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development.

by Sònia Borrell, Andrej Trauner, Daniela Brites, Leen Rigouts, Chloe Loiseau, Mireia Coscolla, Stefan Niemann, Bouke De Jong, Dorothy Yeboah-Manu, Midori Kato-Maeda, Julia Feldmann, Miriam Reinhard, Christian Beisel, Sebastien Gagneux
Published 2019-01-01

SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics

by Franziska Singer, Anja Irmisch, Nora C. Toussaint, Linda Grob, Jochen Singer, Thomas Thurnherr, Niko Beerenwinkel, Mitchell P. Levesque, Reinhard Dummer, Luca Quagliata, Sacha I. Rothschild, Andreas Wicki, Christian Beisel, Daniel J. Stekhoven
Published 2018-10-01

Detection and Genome Sequencing of SARS-CoV-2 in a Domestic Cat with Respiratory Signs in Switzerland

by Julia Klaus, Marina L. Meli, Barbara Willi, Sarah Nadeau, Christian Beisel, Tanja Stadler, Herman Egberink, Shan Zhao, Hans Lutz, Barbara Riond, Nina Rösinger, Hanspeter Stalder, Sandra Renzullo, Regina Hofmann-Lehmann, ETH SARS-CoV-2 Sequencing Team
Published 2021-03-01

A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex

by Daniela Brites, Daniela Brites, Chloé Loiseau, Chloé Loiseau, Fabrizio Menardo, Fabrizio Menardo, Sonia Borrell, Sonia Borrell, Maria Beatrice Boniotti, Robin Warren, Anzaan Dippenaar, Sven David Charles Parsons, Christian Beisel, Marcel A. Behr, Janet A. Fyfe, Mireia Coscolla, Sebastien Gagneux, Sebastien Gagneux
Published 2018-11-01

The Sputum Microbiome in Pulmonary Tuberculosis and Its Association With Disease Manifestations: A Cross-Sectional Study

by Monica R. Ticlla, Monica R. Ticlla, Monica R. Ticlla, Jerry Hella, Jerry Hella, Hellen Hiza, Mohamed Sasamalo, Francis Mhimbira, Liliana K. Rutaihwa, Liliana K. Rutaihwa, Liliana K. Rutaihwa, Sara Droz, Sarah Schaller, Klaus Reither, Klaus Reither, Markus Hilty, Inaki Comas, Christian Beisel, Christoph D. Schmid, Christoph D. Schmid, Christoph D. Schmid, Lukas Fenner, Lukas Fenner, Lukas Fenner, Lukas Fenner, Sebastien Gagneux, Sebastien Gagneux
Published 2021-08-01

Convergent network effects along the axis of gene expression during prostate cancer progression

by Konstantina Charmpi, Tiannan Guo, Qing Zhong, Ulrich Wagner, Rui Sun, Nora C. Toussaint, Christine E. Fritz, Chunhui Yuan, Hao Chen, Niels J. Rupp, Ailsa Christiansen, Dorothea Rutishauser, Jan H. Rüschoff, Christian Fankhauser, Karim Saba, Cedric Poyet, Thomas Hermanns, Kathrin Oehl, Ariane L. Moore, Christian Beisel, Laurence Calzone, Loredana Martignetti, Qiushi Zhang, Yi Zhu, María Rodríguez Martínez, Matteo Manica, Michael C. Haffner, Ruedi Aebersold, Peter J. Wild, Andreas Beyer
Published 2020-12-01

Multiple Introductions of Mycobacterium tuberculosis Lineage 2–Beijing Into Africa Over Centuries

by Liliana K. Rutaihwa, Liliana K. Rutaihwa, Liliana K. Rutaihwa, Fabrizio Menardo, Fabrizio Menardo, David Stucki, David Stucki, Sebastian M. Gygli, Sebastian M. Gygli, Serej D. Ley, Serej D. Ley, Serej D. Ley, Serej D. Ley, Bijaya Malla, Bijaya Malla, Bijaya Malla, Julia Feldmann, Julia Feldmann, Sonia Borrell, Sonia Borrell, Christian Beisel, Kerren Middelkoop, Kerren Middelkoop, E. Jane Carter, E. Jane Carter, Lameck Diero, Marie Ballif, Levan Jugheli, Levan Jugheli, Klaus Reither, Klaus Reither, Lukas Fenner, Lukas Fenner, Lukas Fenner, Daniela Brites, Daniela Brites, Sebastien Gagneux, Sebastien Gagneux
Published 2019-04-01

Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim [version 2; peer review: 3 approved]

by Fabrizio Menardo, Liliana K. Rutaihwa, Michaela Zwyer, Sonia Borrell, Iñaki Comas, Emilyn Costa Conceição, Mireia Coscolla, Helen Cox, Moses Joloba, Horng-Yunn Dou, Julia Feldmann, Lukas Fenner, Janet Fyfe, Qian Gao, Darío García de Viedma, Alberto L. Garcia-Basteiro, Sebastian M. Gygli, Jerry Hella, Hellen Hiza, Levan Jugheli, Lujeko Kamwela, Midori Kato-Maeda, Qingyun Liu, Serej D. Ley, Chloe Loiseau, Surakameth Mahasirimongkol, Bijaya Malla, Prasit Palittapongarnpim, Niaina Rakotosamimanana, Voahangy Rasolofo, Miriam Reinhard, Klaus Reither, Mohamed Sasamalo, Rafael Silva Duarte, Christophe Sola, Philip Suffys, Karla Valeria Batista Lima, Dorothy Yeboah-Manu, Christian Beisel, Daniela Brites, Sebastien Gagneux
Published 2021-03-01

Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim [version 1; peer review: 2 approved]

by Fabrizio Menardo, Liliana K. Rutaihwa, Michaela Zwyer, Sonia Borrell, Iñaki Comas, Emilyn Costa Conceição, Mireia Coscolla, Helen Cox, Moses Joloba, Horng-Yunn Dou, Julia Feldmann, Lukas Fenner, Janet Fyfe, Qian Gao, Darío García de Viedma, Alberto L. Garcia-Basteiro, Sebastian M. Gygli, Jerry Hella, Hellen Hiza, Levan Jugheli, Lujeko Kamwela, Midori Kato-Maeda, Qingyun Liu, Serej D. Ley, Chloe Loiseau, Surakameth Mahasirimongkol, Bijaya Malla, Prasit Palittapongarnpim, Niaina Rakotosamimanana, Voahangy Rasolofo, Miriam Reinhard, Klaus Reither, Mohamed Sasamalo, Rafael Silva Duarte, Christophe Sola, Philip Suffys, Karla Valeria Batista Lima, Dorothy Yeboah-Manu, Christian Beisel, Daniela Brites, Sebastien Gagneux
Published 2021-02-01