Correction: Corrigendum: Systematic pan-cancer analysis of tumour purity

by Dvir Aran, Marina Sirota, Atul J. Butte
Published 2016-02-01

Ten years of pathway analysis: current approaches and outstanding challenges.

by Purvesh Khatri, Marina Sirota, Atul J Butte
Published 2012-01-01

Corrigendum: Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant

by Silvia Pineda, Silvia Pineda, Tara K. Sigdel, Jieming Chen, Annette M. Jackson, Marina Sirota, Marina Sirota, Minnie M. Sarwal
Published 2018-01-01

Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant

by Silvia Pineda, Silvia Pineda, Tara K. Sigdel, Jieming Chen, Annette M. Jackson, Marina Sirota, Marina Sirota, Minnie M. Sarwal
Published 2017-12-01

Tumor-Infiltrating B- and T-Cell Repertoire in Pancreatic Cancer Associated With Host and Tumor Features

by Silvia Pineda, Silvia Pineda, Evangelina López de Maturana, Katharine Yu, Katharine Yu, Akshay Ravoor, Inés Wood, Núria Malats, Marina Sirota, Marina Sirota
Published 2021-09-01

A Haystack Heuristic for Autoimmune Disease Biomarker Discovery Using Next-Gen Immune Repertoire Sequencing Data

by Leonard Apeltsin, Shengzhi Wang, H.-Christian von Büdingen, Marina Sirota
Published 2017-07-01

Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association.

by Rong Chen, Eugene V Davydov, Marina Sirota, Atul J Butte
Published 2010-10-01

Meta-Analysis of Vaginal Microbiome Data Provides New Insights Into Preterm Birth

by Idit Kosti, Idit Kosti, Svetlana Lyalina, Katherine S. Pollard, Katherine S. Pollard, Katherine S. Pollard, Katherine S. Pollard, Atul J. Butte, Atul J. Butte, Marina Sirota, Marina Sirota
Published 2020-04-01

Gene Expression Meta‐Analysis Reveals Concordance in Gene Activation, Pathway, and Cell‐Type Enrichment in Dermatomyositis Target Tissues

by Jessica Neely, Dmitry Rychkov, Manish Paranjpe, Michael Waterfield, Susan Kim, Marina Sirota
Published 2019-12-01

Decreased Mortality Rate Among COVID-19 Patients Prescribed Statins: Data From Electronic Health Records in the US

by Ivana Marić, Tomiko Oskotsky, Tomiko Oskotsky, Idit Kosti, Idit Kosti, Brian Le, Brian Le, Ronald J. Wong, Gary M. Shaw, Marina Sirota, Marina Sirota, David K. Stevenson
Published 2021-02-01

Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants.

by Steven C Bagley, Marina Sirota, Richard Chen, Atul J Butte, Russ B Altman
Published 2016-04-01

Autoimmune disease classification by inverse association with SNP alleles.

by Marina Sirota, Marc A Schaub, Serafim Batzoglou, William H Robinson, Atul J Butte
Published 2009-12-01

Characterizing pre-transplant and post-transplant kidney rejection risk by B cell immune repertoire sequencing

by Silvia Pineda, Tara K. Sigdel, Juliane M. Liberto, Flavio Vincenti, Marina Sirota, Minnie M. Sarwal
Published 2019-04-01

Identifying a high fraction of the human genome to be under selective constraint using GERP++.

by Eugene V Davydov, David L Goode, Marina Sirota, Gregory M Cooper, Arend Sidow, Serafim Batzoglou
Published 2010-12-01

Meta-Analysis of Maternal and Fetal Transcriptomic Data Elucidates the Role of Adaptive and Innate Immunity in Preterm Birth

by Bianca Vora, Bianca Vora, Aolin Wang, Aolin Wang, Idit Kosti, Idit Kosti, Hongtai Huang, Hongtai Huang, Ishan Paranjpe, Tracey J. Woodruff, Tippi MacKenzie, Tippi MacKenzie, Tippi MacKenzie, Marina Sirota, Marina Sirota
Published 2018-05-01

Oxypurinol pharmacokinetics and pharmacodynamics in healthy volunteers: Influence of BCRP Q141K polymorphism and patient characteristics

by Bianca Vora, Deanna J. Brackman, Ling Zou, Maria Garcia‐Cremades, Marina Sirota, Radojka M. Savic, Kathleen M. Giacomini
Published 2021-07-01

Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets

by Bin Chen, Li Ma, Hyojung Paik, Marina Sirota, Wei Wei, Mei-Sze Chua, Samuel So, Atul J. Butte
Published 2017-07-01

Comprehensive analysis of normal adjacent to tumor transcriptomes

by Dvir Aran, Roman Camarda, Justin Odegaard, Hyojung Paik, Boris Oskotsky, Gregor Krings, Andrei Goga, Marina Sirota, Atul J. Butte
Published 2017-10-01

Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women With Alzheimer’s Disease

by Manish D. Paranjpe, Manish D. Paranjpe, Stella Belonwu, Stella Belonwu, Jason K. Wang, Tomiko Oskotsky, Tomiko Oskotsky, Aarzu Gupta, Alice Taubes, Alice Taubes, Kelly A. Zalocusky, Kelly A. Zalocusky, Ishan Paranjpe, Ishan Paranjpe, Benjamin S. Glicksberg, Yadong Huang, Yadong Huang, Marina Sirota, Marina Sirota
Published 2021-09-01

Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis

by Dmitry Rychkov, Dmitry Rychkov, Dmitry Rychkov, Jessica Neely, Tomiko Oskotsky, Steven Yu, Steven Yu, Noah Perlmutter, Joanne Nititham, Alexander Carvidi, Melissa Krueger, Andrew Gross, Lindsey A. Criswell, Lindsey A. Criswell, Lindsey A. Criswell, Lindsey A. Criswell, Judith F. Ashouri, Marina Sirota, Marina Sirota
Published 2021-06-01