Uncovering Effects from the Structure of Metabarcode Sequences for Metagenetic and Microbiome Analysis

by David C. Molik, Michael E. Pfrender, Scott J. Emrich
Published 2020-03-01

A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex

by Jouni Kvist, Camila Gonçalves Athanàsio, Michael E. Pfrender, James B. Brown, John K. Colbourne, Leda Mirbahai
Published 2020-01-01

Combining natural language processing and metabarcoding to reveal pathogen-environment associations.

by David C Molik, DeAndre Tomlinson, Shane Davitt, Eric L Morgan, Matthew Sisk, Benjamin Roche, Natalie Meyers, Michael E Pfrender
Published 2021-04-01

The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

by Yiyuan Li, Rui Zhang, Shanlin Liu, Alexander Donath, Ralph S. Peters, Jessica Ware, Bernhard Misof, Oliver Niehuis, Michael E. Pfrender, Xin Zhou
Published 2017-12-01

Confirmation and distribution of tetrodotoxin for the first time in terrestrial invertebrates: two terrestrial flatworm species (Bipalium adventitium and Bipalium kewense).

by Amber N Stokes, Peter K Ducey, Lorin Neuman-Lee, Charles T Hanifin, Susannah S French, Michael E Pfrender, Edmund D Brodie, Edmund D Brodie
Published 2014-01-01

The roles of vicariance and isolation by distance in shaping biotic diversification across an ancient archipelago: evidence from a Seychelles caecilian amphibian

by Simon T. Maddock, Ronald A. Nussbaum, Julia J. Day, Leigh Latta, Mark Miller, Debra L. Fisk, Mark Wilkinson, Sara Rocha, David J. Gower, Michael E. Pfrender
Published 2020-08-01

Estimating fish alpha- and beta-diversity along a small stream with environmental DNA metabarcoding

by Yiyuan Li, Nathan T. Evans, Mark A. Renshaw, Christopher L. Jerde, Brett P. Olds, Arial J. Shogren, Kristy Deiner, David M. Lodge, Gary A. Lamberti, Michael E. Pfrender
Published 2018-05-01

Functional biogeography as evidence of gene transfer in hypersaline microbial communities.

by J Jacob Parnell, Giovanni Rompato, Leigh C Latta, Michael E Pfrender, Joy D Van Nostrand, Zhili He, Jizhong Zhou, Gary Andersen, Patti Champine, Balasubramanian Ganesan, Bart C Weimer
Published 2010-01-01

A New Reference Genome Assembly for the Microcrustacean Daphnia pulex

by Zhiqiang Ye, Sen Xu, Ken Spitze, Jana Asselman, Xiaoqian Jiang, Matthew S. Ackerman, Jacqueline Lopez, Brent Harker, R. Taylor Raborn, W. Kelley Thomas, Jordan Ramsdell, Michael E. Pfrender, Michael Lynch
Published 2017-05-01

Diversity Metrics Are Robust to Differences in Sampling Location and Depth for Environmental DNA of Plants in Small Temperate Lakes

by Jennifer A. Drummond, Eric R. Larson, Yiyuan Li, David M. Lodge, David M. Lodge, Crysta A. Gantz, Michael E. Pfrender, Mark A. Renshaw, Adrienne M. S. Correa, Scott P. Egan
Published 2021-05-01

Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method

by Kristy Deiner, Jacqueline Lopez, Steve Bourne, Luke Holman, Mathew Seymour, Erin K. Grey, Anaïs Lacoursière, Yiyuan Li, Mark A. Renshaw, Michael E. Pfrender, Marc Rius, Louis Bernatchez, David M. Lodge
Published 2018-11-01

A Seed-Endophytic Bacillus safensis Strain With Antimicrobial Activity Has Genes for Novel Bacteriocin-Like Antimicrobial Peptides

by Jeanne Romero-Severson, Thomas E. Moran, Donna G. Shrader, Francisco R. Fields, Susan Pandey-Joshi, Clayton L. Thomas, Emily C. Palmer, Emily C. Palmer, Joshua D. Shrout, Joshua D. Shrout, Michael E. Pfrender, Shaun W. Lee
Published 2021-09-01

Calibrating Environmental DNA Metabarcoding to Conventional Surveys for Measuring Fish Species Richness

by Mary E. McElroy, Terra L. Dressler, Georgia C. Titcomb, Emily A. Wilson, Kristy Deiner, Tom L. Dudley, Erika J. Eliason, Nathan T. Evans, Steven D. Gaines, Kevin D. Lafferty, Kevin D. Lafferty, Gary A. Lamberti, Yiyuan Li, David M. Lodge, Milton S. Love, Andrew R. Mahon, Michael E. Pfrender, Mark A. Renshaw, Kimberly A. Selkoe, Christopher L. Jerde
Published 2020-08-01

Gene content evolution in the arthropods

by Gregg W. C. Thomas, Elias Dohmen, Daniel S. T. Hughes, Shwetha C. Murali, Monica Poelchau, Karl Glastad, Clare A. Anstead, Nadia A. Ayoub, Phillip Batterham, Michelle Bellair, Greta J. Binford, Hsu Chao, Yolanda H. Chen, Christopher Childers, Huyen Dinh, Harsha Vardhan Doddapaneni, Jian J. Duan, Shannon Dugan, Lauren A. Esposito, Markus Friedrich, Jessica Garb, Robin B. Gasser, Michael A. D. Goodisman, Dawn E. Gundersen-Rindal, Yi Han, Alfred M. Handler, Masatsugu Hatakeyama, Lars Hering, Wayne B. Hunter, Panagiotis Ioannidis, Joy C. Jayaseelan, Divya Kalra, Abderrahman Khila, Pasi K. Korhonen, Carol Eunmi Lee, Sandra L. Lee, Yiyuan Li, Amelia R. I. Lindsey, Georg Mayer, Alistair P. McGregor, Duane D. McKenna, Bernhard Misof, Mala Munidasa, Monica Munoz-Torres, Donna M. Muzny, Oliver Niehuis, Nkechinyere Osuji-Lacy, Subba R. Palli, Kristen A. Panfilio, Matthias Pechmann, Trent Perry, Ralph S. Peters, Helen C. Poynton, Nikola-Michael Prpic, Jiaxin Qu, Dorith Rotenberg, Coby Schal, Sean D. Schoville, Erin D. Scully, Evette Skinner, Daniel B. Sloan, Richard Stouthamer, Michael R. Strand, Nikolaus U. Szucsich, Asela Wijeratne, Neil D. Young, Eduardo E. Zattara, Joshua B. Benoit, Evgeny M. Zdobnov, Michael E. Pfrender, Kevin J. Hackett, John H. Werren, Kim C. Worley, Richard A. Gibbs, Ariel D. Chipman, Robert M. Waterhouse, Erich Bornberg-Bauer, Matthew W. Hahn, Stephen Richards
Published 2020-01-01