Four small puzzles that Rosetta doesn't solve.

by Rhiju Das
Published 2011-01-01

Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.

by Rhiju Das
Published 2013-01-01

Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis.

by Pablo Cordero, Rhiju Das
Published 2015-11-01

Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping

by Siqi Tian, Wipapat Kladwang, Rhiju Das
Published 2018-02-01

Blind predictions of DNA and RNA tweezers experiments with force and torque.

by Fang-Chieh Chou, Jan Lipfert, Rhiju Das
Published 2014-08-01

RNA 3D structure prediction guided by independent folding of homologous sequences

by Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki
Published 2019-10-01

Correction: Consistent global structures of complex RNA states through multidimensional chemical mapping

by Clarence Yu Cheng, Fang-Chieh Chou, Wipapat Kladwang, Siqi Tian, Pablo Cordero, Rhiju Das
Published 2015-07-01

Consistent global structures of complex RNA states through multidimensional chemical mapping

by Clarence Yu Cheng, Fang-Chieh Chou, Wipapat Kladwang, Siqi Tian, Pablo Cordero, Rhiju Das
Published 2015-06-01

EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame.

by Rohan V Koodli, Benjamin Keep, Katherine R Coppess, Fernando Portela, Eterna participants, Rhiju Das
Published 2019-06-01

Hidden Structural Modules in a Cooperative RNA Folding Transition

by Brant Gracia, Hashim M. Al-Hashimi, Namita Bisaria, Rhiju Das, Daniel Herschlag, Rick Russell
Published 2018-03-01

A molecular ruler for measuring quantitative distance distributions.

by Rebecca S Mathew-Fenn, Rhiju Das, Joshua A Silverman, Peter A Walker, Pehr A B Harbury
Published 2008-01-01

Ribosome-induced RNA conformational changes in a viral 3′-UTR sense and regulate translation levels

by Erik W. Hartwick, David A. Costantino, Andrea MacFadden, Jay C. Nix, Siqi Tian, Rhiju Das, Jeffrey S. Kieft
Published 2018-11-01

Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution

by Kaiming Zhang, Shanshan Li, Kalli Kappel, Grigore Pintilie, Zhaoming Su, Tung-Chung Mou, Michael F. Schmid, Rhiju Das, Wah Chiu
Published 2019-12-01

Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis

by Xin Liu, Tao Sun, Anna Shcherbina, Qin Li, Inga Jarmoskaite, Kalli Kappel, Gokul Ramaswami, Rhiju Das, Anshul Kundaje, Jin Billy Li
Published 2021-04-01

A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites

by Deepak Koirala, Yaming Shao, Yelena Koldobskaya, James R. Fuller, Andrew M. Watkins, Sandip A. Shelke, Evgeny V. Pilipenko, Rhiju Das, Phoebe A. Rice, Joseph A. Piccirilli
Published 2019-08-01

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).

by Sergey Lyskov, Fang-Chieh Chou, Shane Ó Conchúir, Bryan S Der, Kevin Drew, Daisuke Kuroda, Jianqing Xu, Brian D Weitzner, P Douglas Renfrew, Parin Sripakdeevong, Benjamin Borgo, James J Havranek, Brian Kuhlman, Tanja Kortemme, Richard Bonneau, Jeffrey J Gray, Rhiju Das
Published 2013-01-01

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.

by Kevin Drew, P Douglas Renfrew, Timothy W Craven, Glenn L Butterfoss, Fang-Chieh Chou, Sergey Lyskov, Brooke N Bullock, Andrew Watkins, Jason W Labonte, Michael Pacella, Krishna Praneeth Kilambi, Andrew Leaver-Fay, Brian Kuhlman, Jeffrey J Gray, Philip Bradley, Kent Kirshenbaum, Paramjit S Arora, Rhiju Das, Richard Bonneau
Published 2013-01-01