Mapping OMIM Disease–Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes

by Castrense Savojardo, Giulia Babbi, Pier Luigi Martelli, Rita Casadio, Rita Casadio
Published 2021-05-01

Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences

by Castrense Savojardo, Matteo Manfredi, Pier Luigi Martelli, Rita Casadio, Rita Casadio
Published 2021-01-01

PhenPath: a tool for characterizing biological functions underlying different phenotypes

by Giulia Babbi, Pier Luigi Martelli, Rita Casadio
Published 2019-07-01

Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito

by Castrense Savojardo, Pier Luigi Martelli, Giacomo Tartari, Rita Casadio
Published 2020-09-01

Functional and Structural Features of Disease-Related Protein Variants

by Castrense Savojardo, Giulia Babbi, Pier Luigi Martelli, Rita Casadio
Published 2019-03-01

Huntingtin: A Protein with a Peculiar Solvent Accessible Surface

by Giulia Babbi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
Published 2021-03-01

Highlighting Human Enzymes Active in Different Metabolic Pathways and Diseases: The Case Study of EC 1.2.3.1 and EC 2.3.1.9

by Giulia Babbi, Davide Baldazzi, Castrense Savojardo, Martelli Pier Luigi, Rita Casadio
Published 2020-07-01

On the Reconstruction of Three-dimensional Protein Structures from Contact Maps

by Pietro Di Lena, Luciano Margara, Marco Vassura, Rita Casadio, Piero Fariselli
Published 2009-01-01

eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes

by Giulia Babbi, Pier Luigi Martelli, Giuseppe Profiti, Samuele Bovo, Castrense Savojardo, Rita Casadio
Published 2017-08-01

Histone deacetylase 1: a target of 9-hydroxystearic acid in the inhibition of cell growth in human colon cancer

by Natalia Calonghi, Concettina Cappadone, Eleonora Pagnotta, Carla Boga, Carlo Bertucci, Jessica Fiori, Gianluca Tasco, Rita Casadio, Lanfranco Masotti
Published 2005-08-01

Frataxin mRNA Isoforms in FRDA Patients and Normal Subjects: Effect of Tocotrienol Supplementation

by Provvidenza Maria Abruzzo, Marina Marini, Alessandra Bolotta, Gemma Malisardi, Stefano Manfredini, Alessandro Ghezzo, Antonella Pini, Gianluca Tasco, Rita Casadio
Published 2013-01-01

Oligomerization of Sulfolobus solfataricus signature amidase is promoted by acidic pH and high temperature

by Anna Scotto D’Abusco, Rita Casadio, Gianluca Tasco, Laura Giangiacomo, Anna Giartosio, Valentina Calamia, Stefania Di Marco, Roberta Chiaraluce, Valerio Consalvi, Roberto Scandurra, Laura Politi
Published 2005-01-01

Whole Genome Sequence Analysis of <i>Brucella abortus</i> Isolates from Various Regions of South Africa

by Maphuti Betty Ledwaba, Barbara Akorfa Glover, Itumeleng Matle, Giuseppe Profiti, Pier Luigi Martelli, Rita Casadio, Katiuscia Zilli, Anna Janowicz, Francesca Marotta, Giuliano Garofolo, Henriette van Heerden
Published 2021-03-01

Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

by Vera Vendramin, Danara Ormanbekova, Simone Scalabrin, Davide Scaglione, Marco Maccaferri, Pierluigi Martelli, Silvio Salvi, Irena Jurman, Rita Casadio, Federica Cattonaro, Roberto Tuberosa, Andrea Massi, Michele Morgante
Published 2019-04-01

The FAGenomicH project: towards a whole candidate gene approach to identify markers associated with fatness and production traits in pigs and investigate the pig as a model for hum...

by Vincenzo Russo, Rita Casadio, Giovanni Romeo, Manuela Vargiolu, Elena Bonora, Daniela Giovanna Calò, Giuliano Galimberti, Lucia Tognazzi, Camilla Speroni, Emilio Scotti, Michela Colombo, Raffaele Fronza, Luca Fontanesi
Published 2010-01-01

Cauliflower Mosaic Virus TAV, a Plant Virus Protein That Functions like Ribonuclease H1 and is Cytotoxic to Glioma Cells

by Valentina Turri, Olga S. Latinovic, Massimiliano Bonafè, Ngeh Toyang, Maria Parigi, Matteo Calassanzio, Pier Luigi Martelli, Alessandro Vagheggini, Giulia Abbati, Anna Sarnelli, Rita Casadio, Claudio Ratti, Paola Massi, James E. Schoelz, Maria S. Salvato, Filippo Piccinini, Giovanni Martinelli
Published 2020-01-01

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

by Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z. Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George Georghiou, Huy N. Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S. Rifaioglu, Alperen Dalkıran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemovic, Vladimir R. Perovic, Radoslav S. Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fabio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S. Black, Dane Jo, Erica Suh, Jonathan B. Dayton, Dallas J. Larsen, Ashton R. Omdahl, Liam J. McGuffin, Danielle A. Brackenridge, Patricia C. Babbitt, Jeffrey M. Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E. Brenner, Christine A. Orengo, Constance J. Jeffery, Giovanni Bosco, Deborah A. Hogan, Maria J. Martin, Claire O’Donovan, Sean D. Mooney, Casey S. Greene, Predrag Radivojac, Iddo Friedberg
Published 2019-11-01