RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data.

by Simon H Tausch, Bernhard Y Renard, Andreas Nitsche, Piotr Wojciech Dabrowski
Published 2015-01-01

Decentralized Investigation of Bacterial Outbreaks Based on Hashed cgMLST

by Carlus Deneke, Laura Uelze, Holger Brendebach, Simon H. Tausch, Burkhard Malorny
Published 2021-05-01

Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

by Carlus Deneke, Holger Brendebach, Laura Uelze, Maria Borowiak, Burkhard Malorny, Simon H. Tausch
Published 2021-04-01

Establishment of a Plasmid-Based Reverse Genetics System for the Cell Culture-Adapted Hepatitis E Virus Genotype 3c Strain 47832c

by Johannes Scholz, Christine Bächlein, Ashish K. Gadicherla, Alexander Falkenhagen, Simon H. Tausch, Reimar Johne
Published 2020-02-01

First Detection of GES-5-Producing <i>Escherichia coli</i> from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production

by Alexandra Irrgang, Simon H. Tausch, Natalie Pauly, Mirjam Grobbel, Annemarie Kaesbohrer, Jens A. Hammerl
Published 2020-10-01

Berlin Squirrelpox Virus, a New Poxvirus in Red Squirrels, Berlin, Germany

by Gudrun Wibbelt, Simon H. Tausch, Piotr W. Dabrowski, Olivia Kershaw, Andreas Nitsche, Livia Schrick
Published 2017-10-01

First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep

by Laura Uelze, Maria Borowiak, Carlus Deneke, Cécile Jacobs, István Szabó, Simon H. Tausch, Burkhard Malorny
Published 2019-10-01

Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

by Josephine Grützke, Burkhard Malorny, Jens Andre Hammerl, Anne Busch, Simon H. Tausch, Herbert Tomaso, Carlus Deneke
Published 2019-08-01

Typing methods based on whole genome sequencing data

by Laura Uelze, Josephine Grützke, Maria Borowiak, Jens Andre Hammerl, Katharina Juraschek, Carlus Deneke, Simon H. Tausch, Burkhard Malorny
Published 2020-02-01

Distantly Related Rotaviruses in Common Shrews, Germany, 2004–2014

by Reimar Johne, Simon H. Tausch, Josephine Grützke, Alexander Falkenhagen, Corinna Patzina-Mehling, Martin Beer, Dirk Höper, Rainer G. Ulrich
Published 2019-12-01

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal <i>Escherichia coli</i>

by Katharina Juraschek, Maria Borowiak, Simon H. Tausch, Burkhard Malorny, Annemarie Käsbohrer, Saria Otani, Stefan Schwarz, Diana Meemken, Carlus Deneke, Jens Andre Hammerl
Published 2021-03-01

What WGS Reveals about <i>Salmonella enterica</i> subsp. <i>enterica</i> in Wildlife in Germany

by Laura Uelze, Angelina Bloch, Maria Borowiak, Mirjam Grobbel, Carlus Deneke, Matthias Fischer, Burkhard Malorny, Michael Pietsch, Sandra Simon, István Szabó, Simon H. Tausch, Jennie Fischer
Published 2021-09-01

German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing

by Laura Uelze, Maria Borowiak, Markus Bönn, Erik Brinks, Carlus Deneke, Thomas Hankeln, Sylvia Kleta, Larissa Murr, Kerstin Stingl, Kathrin Szabo, Simon H. Tausch, Anne Wöhlke, Burkhard Malorny
Published 2020-09-01

Whole Genome Characterization of Orthopoxvirus (OPV) Abatino, a Zoonotic Virus Representing a Putative Novel Clade of Old World Orthopoxviruses

by Cesare E. M. Gruber, Emanuela Giombini, Marina Selleri, Simon H. Tausch, Andreas Andrusch, Alona Tyshaieva, Giusy Cardeti, Raniero Lorenzetti, Lorenzo De Marco, Fabrizio Carletti, Andreas Nitsche, Maria R. Capobianchi, Giuseppe Ippolito, Gian Luca Autorino, Concetta Castilletti
Published 2018-10-01

Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

by Laura Uelze, Natalie Becker, Maria Borowiak, Ulrich Busch, Alexandra Dangel, Carlus Deneke, Jennie Fischer, Antje Flieger, Sabrina Hepner, Ingrid Huber, Ulrich Methner, Jörg Linde, Michael Pietsch, Sandra Simon, Andreas Sing, Simon H. Tausch, Istvan Szabo, Burkhard Malorny
Published 2021-02-01

Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

by Dirk Höper, Josephine Grützke, Annika Brinkmann, Joël Mossong, Sébastien Matamoros, Richard J. Ellis, Carlus Deneke, Simon H. Tausch, Isabel Cuesta, Sara Monzón, Miguel Juliá, Thomas Nordahl Petersen, Rene S. Hendriksen, Sünje J. Pamp, Mikael Leijon, Mikhayil Hakhverdyan, Aaron M. Walsh, Paul D. Cotter, Lakshmi Chandrasekaran, Moon Y. F. Tay, Joergen Schlundt, Claudia Sala, Alessandra De Cesare, Andreas Nitsche, Martin Beer, Claudia Wylezich
Published 2020-11-01