Hsf1 activation inhibits rapamycin resistance and TOR signaling in yeast revealed by combined proteomic and genetic analysis.

by Sricharan Bandhakavi, Hongwei Xie, Brennon O'Callaghan, Hiroshi Sakurai, Do-Hyung Kim, Timothy J Griffin
Published 2008-02-01

Fibroblast growth factor receptor 1 activation in mammary tumor cells promotes macrophage recruitment in a CX3CL1-dependent manner.

by Johanna R Reed, Matthew D Stone, Thomas C Beadnell, Yungil Ryu, Timothy J Griffin, Kathryn L Schwertfeger
Published 2012-01-01

Plasma lipoproteome in Alzheimer’s disease: a proof-of-concept study

by Danni Li, Fangying Huang, Yingchun Zhao, Peter W. Villata, Timothy J. Griffin, Lin Zhang, Ling Li, Fang Yu
Published 2018-09-01

Quantitative proteomic analysis of oral brush biopsies identifies secretory leukocyte protease inhibitor as a promising, mechanism-based oral cancer biomarker.

by Ya Yang, Nelson L Rhodus, Frank G Ondrey, Beverly R K Wuertz, Xiaobing Chen, Yaqin Zhu, Timothy J Griffin
Published 2014-01-01

Uncovering genes with divergent mRNA-protein dynamics in Streptomyces coelicolor.

by Karthik P Jayapal, Robin J Philp, Yee-Jiun Kok, Miranda G S Yap, David H Sherman, Timothy J Griffin, Wei-Shou Hu
Published 2008-05-01

Salivary proteomics of healthy dogs: An in depth catalog.

by Sheila M F Torres, Eva Furrow, Clarissa P Souza, Jennifer L Granick, Ebbing P de Jong, Timothy J Griffin, Xiong Wang
Published 2018-01-01

Improve your Galaxy text life: The Query Tabular Tool [version 2; referees: 2 approved, 1 approved with reservations]

by James E. Johnson, Praveen Kumar, Caleb Easterly, Mark Esler, Subina Mehta, Arthur C. Eschenlauer, Adrian D. Hegeman, Pratik D. Jagtap, Timothy J. Griffin
Published 2019-01-01

A functional screen provides evidence for a conserved, regulatory, juxtamembrane phosphorylation site in guanylyl cyclase a and B.

by Andrea R Yoder, Jerid W Robinson, Deborah M Dickey, Joshua Andersland, Beth A Rose, Matthew D Stone, Timothy J Griffin, Lincoln R Potter
Published 2012-01-01

Improve your Galaxy text life: The Query Tabular Tool [version 1; referees: 1 approved, 2 approved with reservations]

by James E. Johnson, Praveen Kumar, Caleb Easterly, Mark Esler, Subina Mehta, Arthur C. Eschenlauer, Adrian D. Hegeman, Pratik D. Jagtap, Timothy J. Griffin
Published 2018-10-01

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework [version 2; peer review: 2 approved]

by Subina Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia Hiltemann, Magnus Ø Arntzen, Benoit J. Kunath, Phillip B. Pope, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap
Published 2021-04-01

Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform

by Subina Mehta, Caleb W. Easterly, Ray Sajulga, Robert J. Millikin, Andrea Argentini, Ignacio Eguinoa, Lennart Martens, Michael R. Shortreed, Lloyd M. Smith, Thomas McGowan, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap
Published 2020-07-01

Survey of metaproteomics software tools for functional microbiome analysis.

by Ray Sajulga, Caleb Easterly, Michael Riffle, Bart Mesuere, Thilo Muth, Subina Mehta, Praveen Kumar, James Johnson, Bjoern Andreas Gruening, Henning Schiebenhoefer, Carolin A Kolmeder, Stephan Fuchs, Brook L Nunn, Joel Rudney, Timothy J Griffin, Pratik D Jagtap
Published 2020-01-01

Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions.

by Ebbing P de Jong, Hongwei Xie, Getiria Onsongo, Matthew D Stone, Xiao-Bing Chen, Joel A Kooren, Eric W Refsland, Robert J Griffin, Frank G Ondrey, Baolin Wu, Chap T Le, Nelson L Rhodus, John V Carlis, Timothy J Griffin
Published 2010-06-01

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework

by Clemens Blank, Caleb Easterly, Bjoern Gruening, James Johnson, Carolin A. Kolmeder, Praveen Kumar, Damon May, Subina Mehta, Bart Mesuere, Zachary Brown, Joshua E. Elias, W. Judson Hervey, Thomas McGowan, Thilo Muth, Brook L. Nunn, Joel Rudney, Alessandro Tanca, Timothy J. Griffin, Pratik D. Jagtap
Published 2018-01-01