Cancer gene expression profiles associated with clinical outcomes to chemotherapy treatments

by Nicolas Borisov, Maxim Sorokin, Victor Tkachev, Andrew Garazha, Anton Buzdin
Published 2020-09-01

Flexible Data Trimming Improves Performance of Global Machine Learning Methods in Omics-Based Personalized Oncology

by Victor Tkachev, Maxim Sorokin, Constantin Borisov, Andrew Garazha, Anton Buzdin, Nicolas Borisov
Published 2020-01-01

Oxidative Stress and Free-Radical Oxidation in BCG Granulomatosis Development

by Elena Menshchikova, Nikolay Zenkov, Victor Tkachev, Oksana Potapova, Liliya Cherdantseva, Vyacheslav Shkurupiy
Published 2013-01-01

Shambhala: a platform-agnostic data harmonizer for gene expression data

by Nicolas Borisov, Irina Shabalina, Victor Tkachev, Maxim Sorokin, Andrew Garazha, Andrey Pulin, Ilya I. Eremin, Anton Buzdin
Published 2019-02-01

Retroelement-Linked H3K4me1 Histone Tags Uncover Regulatory Evolution Trends of Gene Enhancers and Feature Quickly Evolving Molecular Processes in Human Physiology

by Daniil Nikitin, Nikita Kolosov, Anastasiia Murzina, Karina Pats, Anton Zamyatin, Victor Tkachev, Maxim Sorokin, Philippe Kopylov, Anton Buzdin
Published 2019-10-01

Machine Learning Applicability for Classification of PAD/VCD Chemotherapy Response Using 53 Multiple Myeloma RNA Sequencing Profiles

by Nicolas Borisov, Anna Sergeeva, Maria Suntsova, Maria Suntsova, Mikhail Raevskiy, Nurshat Gaifullin, Larisa Mendeleeva, Alexander Gudkov, Maria Nareiko, Andrew Garazha, Andrew Garazha, Victor Tkachev, Victor Tkachev, Xinmin Li, Maxim Sorokin, Maxim Sorokin, Maxim Sorokin, Vadim Surin, Anton Buzdin, Anton Buzdin, Anton Buzdin
Published 2021-04-01

Correction: Nikitin, D., et al. Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution. <i>Cells</i> 2019, <i>8...

by Daniil Nikitin, Andrew Garazha, Maxim Sorokin, Dmitry Penzar, Victor Tkachev, Alexander Markov, Nurshat Gaifullin, Pieter Borger, Alexander Poltorak, Anton Buzdin
Published 2019-08-01

Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution

by Daniil Nikitin, Andrew Garazha, Maxim Sorokin, Dmitry Penzar, Victor Tkachev, Alexander Markov, Nurshat Gaifullin, Pieter Borger, Alexander Poltorak, Anton Buzdin
Published 2019-02-01

FLOating-Window Projective Separator (FloWPS): A Data Trimming Tool for Support Vector Machines (SVM) to Improve Robustness of the Classifier

by Victor Tkachev, Maxim Sorokin, Maxim Sorokin, Artem Mescheryakov, Alexander Simonov, Andrew Garazha, Anton Buzdin, Anton Buzdin, Anton Buzdin, Ilya Muchnik, Nicolas Borisov, Nicolas Borisov
Published 2019-01-01

H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 Histone Tags Suggest Distinct Regulatory Evolution of Open and Condensed Chromatin Landmarks

by Anna A. Igolkina, Arsenii Zinkevich, Kristina O. Karandasheva, Aleksey A. Popov, Maria V. Selifanova, Daria Nikolaeva, Victor Tkachev, Dmitry Penzar, Daniil M. Nikitin, Anton Buzdin
Published 2019-09-01

Algorithmically Deduced <i>FREM2</i> Molecular Pathway Is a Potent Grade and Survival Biomarker of Human Gliomas

by Marianna Zolotovskaia, Victor Tkachev, Maxim Sorokin, Andrew Garazha, Ella Kim, Sven Rainer Kantelhardt, Sven-Ernö Bikar, Alja Zottel, Neja Šamec, Denis Kuzmin, Bettina Sprang, Alexey Moisseev, Alf Giese, Victor Efimov, Ivana Jovčevska, Anton Buzdin
Published 2021-08-01

Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins

by Daniil Nikitin, Daniil Nikitin, Dmitry Penzar, Andrew Garazha, Andrew Garazha, Maxim Sorokin, Maxim Sorokin, Maxim Sorokin, Victor Tkachev, Nicolas Borisov, Nicolas Borisov, Alexander Poltorak, Vladimir Prassolov, Anton A. Buzdin, Anton A. Buzdin, Anton A. Buzdin, Anton A. Buzdin
Published 2018-01-01

Evidence for persistence of the SHIV reservoir early after MHC haploidentical hematopoietic stem cell transplantation

by Lucrezia Colonna, Christopher W. Peterson, John B. Schell, Judith M. Carlson, Victor Tkachev, Melanie Brown, Alison Yu, Sowmya Reddy, Willi M. Obenza, Veronica Nelson, Patricia S. Polacino, Heather Mack, Shiu-Lok Hu, Katie Zeleski, Michelle Hoffman, Joe Olvera, Scott N. Furlan, Hengqi Zheng, Agne Taraseviciute, Daniel J. Hunt, Kayla Betz, Jennifer F. Lane, Keith Vogel, Charlotte E. Hotchkiss, Cassie Moats, Audrey Baldessari, Robert D. Murnane, Christopher English, Cliff A. Astley, Solomon Wangari, Brian Agricola, Joel Ahrens, Naoto Iwayama, Andrew May, Laurence Stensland, Meei-Li W. Huang, Keith R. Jerome, Hans-Peter Kiem, Leslie S. Kean
Published 2018-10-01