Decoding diversity in a coral reef fish species complex with restricted range using metagenomic sequencing of gut contents

by Beverly J. French, Yan Wei Lim, Brian J. Zgliczynski, Robert A. Edwards, Forest Rohwer, Stuart A. Sandin
Published 2020-04-01

Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease

by Robert A. Quinn, Yan Wei Lim, Tytus D. Mak, Katrine Whiteson, Mike Furlan, Douglas Conrad, Forest Rohwer, Pieter Dorrestein
Published 2016-08-01

Ecological networking of cystic fibrosis lung infections

by Robert A Quinn, Katrine Whiteson, Yan Wei Lim, Jiangchao Zhao, Douglas Conrad, John J LiPuma, Forest Rohwer, Stefanie Widder
Published 2016-12-01

Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes.

by Terry Fei Fan Ng, Dana L Willner, Yan Wei Lim, Robert Schmieder, Betty Chau, Christina Nilsson, Simon Anthony, Yijun Ruan, Forest Rohwer, Mya Breitbart
Published 2011-01-01

Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data.

by Yan Wei Lim, Robert Schmieder, Matthew Haynes, Mike Furlan, T David Matthews, Katrine Whiteson, Stephen J Poole, Christopher S Hayes, David A Low, Heather Maughan, Robert Edwards, Douglas Conrad, Forest Rohwer
Published 2013-01-01

Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness.

by John L Mokili, Bas E Dutilh, Yan Wei Lim, Bradley S Schneider, Travis Taylor, Matthew R Haynes, David Metzgar, Christopher A Myers, Patrick J Blair, Bahador Nosrat, Nathan D Wolfe, Forest Rohwer
Published 2013-01-01

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information

by Ana Georgina Cobián Güemes, Yan Wei Lim, Robert A. Quinn, Douglas J. Conrad, Sean Benler, Heather Maughan, Rob Edwards, Thomas Brettin, Vito Adrian Cantú, Daniel Cuevas, Rohaum Hamidi, Pieter Dorrestein, Forest Rohwer
Published 2019-04-01

Species-specific viromes in the ancestral holobiont Hydra.

by Juris A Grasis, Tim Lachnit, Friederike Anton-Erxleben, Yan Wei Lim, Robert Schmieder, Sebastian Fraune, Sören Franzenburg, Santiago Insua, GloriaMay Machado, Matthew Haynes, Mark Little, Robert Kimble, Philip Rosenstiel, Forest L Rohwer, Thomas C G Bosch
Published 2014-01-01

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

by Neha Garg, Yi Zeng, Anna Edlund, Alexey V. Melnik, Laura M. Sanchez, Hosein Mohimani, Alexey Gurevich, Vivian Miao, Stefan Schiffler, Yan Wei Lim, Tal Luzzatto-Knaan, Shengxin Cai, Forest Rohwer, Pavel A. Pevzner, Robert H. Cichewicz, Theodore Alexandrov, Pieter C. Dorrestein, Janet K. Jansson
Published 2016-12-01

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition

by Yan Wei Lim, Daniel A. Cuevas, Genivaldo Gueiros Z. Silva, Kristen Aguinaldo, Elizabeth A. Dinsdale, Andreas F. Haas, Mark Hatay, Savannah E. Sanchez, Linda Wegley-Kelly, Bas E. Dutilh, Timothy T. Harkins, Clarence C. Lee, Warren Tom, Stuart A. Sandin, Jennifer E. Smith, Brian Zgliczynski, Mark J.A. Vermeij, Forest Rohwer, Robert A. Edwards
Published 2014-08-01

Diel population and functional synchrony of microbial communities on coral reefs

by Linda Wegley Kelly, Craig E. Nelson, Andreas F. Haas, Douglas S. Naliboff, Sandi Calhoun, Craig A. Carlson, Robert A. Edwards, Michael D. Fox, Mark Hatay, Maggie D. Johnson, Emily L. A. Kelly, Yan Wei Lim, Saichetana Macherla, Zachary A. Quinlan, Genivaldo Gueiros Z. Silva, Mark J. A. Vermeij, Brian Zgliczynski, Stuart A. Sandin, Jennifer E. Smith, Forest Rohwer
Published 2019-04-01

Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis

by Alexey V. Melnik, Yoshiki Vázquez-Baeza, Alexander A. Aksenov, Embriette Hyde, Andrew C. McAvoy, Mingxun Wang, Ricardo R. da Silva, Ivan Protsyuk, Jason V. Wu, Amina Bouslimani, Yan Wei Lim, Tal Luzzatto-Knaan, William Comstock, Robert A. Quinn, Richard Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S. Brouha, Nuno Bandeira, Grace Y. Lin, Forest Rohwer, Douglas J. Conrad, Theodore Alexandrov, Rob Knight, Pieter C. Dorrestein, Neha Garg
Published 2019-09-01

Using symptom-based case predictions to identify host genetic factors that contribute to COVID-19 susceptibility.

by Irene V van Blokland, Pauline Lanting, Anil P S Ori, Judith M Vonk, Robert C A Warmerdam, Johanna C Herkert, Floranne Boulogne, Annique Claringbould, Esteban A Lopera-Maya, Meike Bartels, Jouke-Jan Hottenga, Andrea Ganna, Juha Karjalainen, Lifelines COVID-19 cohort study, COVID-19 Host Genetics Initiative, Caroline Hayward, Chloe Fawns-Ritchie, Archie Campbell, David Porteous, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Stephen Riffle, Alexandre Bolze, Simon White, Francisco Tanudjaja, Xueqing Wang, Jimmy M Ramirez, Yan Wei Lim, James T Lu, Nicole L Washington, Eco J C de Geus, Patrick Deelen, H Marike Boezen, Lude H Franke
Published 2021-01-01

Using symptom-based case predictions to identify host genetic factors that contribute to COVID-19 susceptibility

by Irene V. van Blokland, Pauline Lanting, Anil P. S. Ori, Judith M. Vonk, Robert C. A. Warmerdam, Johanna C. Herkert, Floranne Boulogne, Annique Claringbould, Esteban A. Lopera-Maya, Meike Bartels, Jouke-Jan Hottenga, Andrea Ganna, Juha Karjalainen, Lifelines COVID-19 cohort study, The COVID-19 Host Genetics Initiative, Caroline Hayward, Chloe Fawns-Ritchie, Archie Campbell, David Porteous, Elizabeth T. Cirulli, Kelly M. Schiabor Barrett, Stephen Riffle, Alexandre Bolze, Simon White, Francisco Tanudjaja, Xueqing Wang, Jimmy M. Ramirez, Yan Wei Lim, James T. Lu, Nicole L. Washington, Eco J. C. de Geus, Patrick Deelen, H. Marike Boezen, Lude H. Franke
Published 2021-01-01