Metagenomic analysis of viral communities in (hado)pelagic sediments.

by Mitsuhiro Yoshida, Yoshihiro Takaki, Masamitsu Eitoku, Takuro Nunoura, Ken Takai
Published 2013-01-01

Genomic heterogeneity in a natural archaeal population suggests a model of tRNA gene disruption.

by Junichi Sugahara, Kosuke Fujishima, Takuro Nunoura, Yoshihiro Takaki, Hideto Takami, Ken Takai, Masaru Tomita, Akio Kanai
Published 2012-01-01

Physiological and genomic features of a novel sulfur-oxidizing gammaproteobacterium belonging to a previously uncultivated symbiotic lineage isolated from a hydrothermal vent.

by Takuro Nunoura, Yoshihiro Takaki, Hiromi Kazama, Jungo Kakuta, Shigeru Shimamura, Hiroko Makita, Miho Hirai, Masayuki Miyazaki, Ken Takai
Published 2014-01-01

Microbiota in the coelomic fluid of two common coastal starfish species and characterization of an abundant Helicobacter-related taxon

by Satoshi Nakagawa, Hikari Saito, Akihiro Tame, Miho Hirai, Hideyuki Yamaguchi, Takashi Sunata, Masanori Aida, Hisashi Muto, Shigeki Sawayama, Yoshihiro Takaki
Published 2017-08-01

Distribution and niche separation of planktonic microbial communities in the water columns from the surface to the hadal waters of the Japan Trench under the eutrophic ocean

by Takuro Nunoura, Miho Hirai, Yukari Yoshida-Takashima, Manabu Nishizawa, Shinsuke Kawagucci, Taichi Yokokawa, Junichi Miyazaki, Osamu Koide, Hiroko Makita, Yoshihiro Takaki, Michinari SUNAMURA, Ken Takai
Published 2016-08-01

Viral Communities in the Global Deep Ocean Conveyor Belt Assessed by Targeted Viromics

by Daniele De Corte, Joaquín Martínez Martínez, Mariana Silvia Cretoiu, Yoshihiro Takaki, Takuro Nunoura, Eva Sintes, Eva Sintes, Gerhard J. Herndl, Gerhard J. Herndl, Taichi Yokokawa
Published 2019-08-01

A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem.

by Hideto Takami, Hideki Noguchi, Yoshihiro Takaki, Ikuo Uchiyama, Atsushi Toyoda, Shinro Nishi, Gab-Joo Chee, Wataru Arai, Takuro Nunoura, Takehiko Itoh, Masahira Hattori, Ken Takai
Published 2012-01-01

Correction: Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clams.

by Shigeru Shimamura, Takashi Kaneko, Genki Ozawa, Mamiko Nishino Matsumoto, Takeru Koshiishi, Yoshihiro Takaki, Chiaki Kato, Ken Takai, Takao Yoshida, Katsunori Fujikura, James P Barry, Tadashi Maruyama
Published 2017-01-01

Algivore or phototroph? Plakobranchus ocellatus (Gastropoda) continuously acquires kleptoplasts and nutrition from multiple algal species in nature.

by Taro Maeda, Euichi Hirose, Yoshito Chikaraishi, Masaru Kawato, Kiyotaka Takishita, Takao Yoshida, Heroen Verbruggen, Jiro Tanaka, Shigeru Shimamura, Yoshihiro Takaki, Masashi Tsuchiya, Kenji Iwai, Tadashi Maruyama
Published 2012-01-01

Quantitative Viral Community DNA Analysis Reveals the Dominance of Single-Stranded DNA Viruses in Offshore Upper Bathyal Sediment from Tohoku, Japan

by Mitsuhiro Yoshida, Tomohiro Mochizuki, Tomohiro Mochizuki, Syun-Ichi Urayama, Yukari Yoshida-Takashima, Shinro Nishi, Miho Hirai, Hidetaka Nomaki, Hidetaka Nomaki, Yoshihiro Takaki, Takuro Nunoura, Ken Takai
Published 2018-02-01

Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clams.

by Shigeru Shimamura, Takashi Kaneko, Genki Ozawa, Mamiko Nishino Matsumoto, Takeru Koshiishi, Yoshihiro Takaki, Chiaki Kato, Ken Takai, Takao Yoshida, Katsunori Fujikura, James P Barry, Tadashi Maruyama
Published 2017-01-01

Diverged and Active Partitiviruses in Lichen

by Syun-ichi Urayama, Syun-ichi Urayama, Syun-ichi Urayama, Nobutaka Doi, Fumie Kondo, Yuto Chiba, Yoshihiro Takaki, Miho Hirai, Yasutaka Minegishi, Daisuke Hagiwara, Daisuke Hagiwara, Takuro Nunoura
Published 2020-10-01

Surfing the vegetal pole in a small population: extracellular vertical transmission of an 'intracellular' deep-sea clam symbiont

by Tetsuro Ikuta, Kanae Igawa, Akihiro Tame, Tsuneyoshi Kuroiwa, Haruko Kuroiwa, Yui Aoki, Yoshihiro Takaki, Yukiko Nagai, Genki Ozawa, Masahiro Yamamoto, Ryusaku Deguchi, Katsunori Fujikura, Tadashi Maruyama, Takao Yoshida
Published 2016-01-01

Pangenomics Analysis Reveals Diversification of Enzyme Families and Niche Specialization in Globally Abundant SAR202 Bacteria

by Jimmy H. W. Saw, Takuro Nunoura, Miho Hirai, Yoshihiro Takaki, Rachel Parsons, Michelle Michelsen, Krista Longnecker, Elizabeth B. Kujawinski, Ramunas Stepanauskas, Zachary Landry, Craig A. Carlson, Stephen J. Giovannoni
Published 2020-01-01

Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales.

by Sanae Sakai, Yoshihiro Takaki, Shigeru Shimamura, Mitsuo Sekine, Takahisa Tajima, Hiroki Kosugi, Natsuko Ichikawa, Eiji Tasumi, Aiko T Hiraki, Ai Shimizu, Yumiko Kato, Rika Nishiko, Koji Mori, Nobuyuki Fujita, Hiroyuki Imachi, Ken Takai
Published 2011-01-01

Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatus

by Taro Maeda, Shunichi Takahashi, Takao Yoshida, Shigeru Shimamura, Yoshihiro Takaki, Yukiko Nagai, Atsushi Toyoda, Yutaka Suzuki, Asuka Arimoto, Hisaki Ishii, Nori Satoh, Tomoaki Nishiyama, Mitsuyasu Hasebe, Tadashi Maruyama, Jun Minagawa, Junichi Obokata, Shuji Shigenobu
Published 2021-04-01

Deepest and hottest hydrothermal activity in the Okinawa Trough: the Yokosuka site at Yaeyama Knoll

by Junichi Miyazaki, Shinsuke Kawagucci, Akiko Makabe, Ayu Takahashi, Kazuya Kitada, Junji Torimoto, Yohei Matsui, Eiji Tasumi, Takazo Shibuya, Kentaro Nakamura, Shunsuke Horai, Shun Sato, Jun-ichiro Ishibashi, Hayato Kanzaki, Satoshi Nakagawa, Miho Hirai, Yoshihiro Takaki, Kyoko Okino, Hiromi Kayama Watanabe, Hidenori Kumagai, Chong Chen
Published 2017-01-01

The Scaly-foot Snail genome and implications for the origins of biomineralised armour

by Jin Sun, Chong Chen, Norio Miyamoto, Runsheng Li, Julia D. Sigwart, Ting Xu, Yanan Sun, Wai Chuen Wong, Jack C. H. Ip, Weipeng Zhang, Yi Lan, Dass Bissessur, Tomo-o Watsuji, Hiromi Kayama Watanabe, Yoshihiro Takaki, Kazuho Ikeo, Nobuyuki Fujii, Kazutoshi Yoshitake, Jian-Wen Qiu, Ken Takai, Pei-Yuan Qian
Published 2020-04-01