Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics

Abstract Background Enrichment or over-representation analysis is a common method used in bioinformatics studies of transcriptomics, metabolomics, and microbiome datasets. The key idea behind enrichment analysis is: given a set of significantly expressed genes (or metabolites), use that set to infer...

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Bibliographic Details
Main Authors: Peter D. Karp, Peter E. Midford, Ron Caspi, Arkady Khodursky
Format: Article
Language:English
Published: BMC 2021-03-01
Series:BMC Genomics
Subjects:
Online Access:https://doi.org/10.1186/s12864-021-07502-8