Producing polished prokaryotic pangenomes with the Panaroo pipeline

Producing polished prokaryotic pangenomes with the Panaroo pipeline

Abstract Population-level comparisons of prokaryotic genomes must take into account the substantial differences in gene content resulting from horizontal gene transfer, gene duplication and gene loss. However, the automated annotation of prokaryotic genomes is imperfect, and errors due to fragmented...

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Bibliographic Details
Main Authors: Gerry Tonkin-Hill, Neil MacAlasdair, Christopher Ruis, Aaron Weimann, Gal Horesh, John A. Lees, Rebecca A. Gladstone, Stephanie Lo, Christopher Beaudoin, R. Andres Floto, Simon D.W. Frost, Jukka Corander, Stephen D. Bentley, Julian Parkhill
Format: Article
Language:English
Published: BMC 2020-07-01
Series:Genome Biology
Subjects:
Bacteria
Pangenome
Prokaryote
Clustering
Horizontal gene transfer
Online Access:http://link.springer.com/article/10.1186/s13059-020-02090-4

Internet

http://link.springer.com/article/10.1186/s13059-020-02090-4

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