Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

Abstract Background Whole genome sequencing of cultured pathogens is the state of the art public health response for the bioinformatic source tracking of illness outbreaks. Quasimetagenomics can substantially reduce the amount of culturing needed before a high quality genome can be recovered. Highly...

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Bibliographic Details
Main Authors: Seth Commichaux, Kiran Javkar, Padmini Ramachandran, Niranjan Nagarajan, Denis Bertrand, Yi Chen, Elizabeth Reed, Narjol Gonzalez-Escalona, Errol Strain, Hugh Rand, Mihai Pop, Andrea Ottesen
Format: Article
Language:English
Published: BMC 2021-05-01
Series:BMC Genomics
Subjects:
Quasimetagenomics
Metagenomics
Source tracking
Listeria
Nanopore
Assembly
Online Access:https://doi.org/10.1186/s12864-021-07702-2

Internet

https://doi.org/10.1186/s12864-021-07702-2

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