Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Various ‘omics data types have been generated for Populus trichocarpa, each providing a layer of information which can be represented as a density signal across a chromosome. We make use of genome sequence data, variants data across a population as well as methylation data across 10 different tissue...

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Bibliographic Details
Main Authors: Deborah Weighill, David Macaya-Sanz, Stephen Paul DiFazio, Wayne Joubert, Manesh Shah, Jeremy Schmutz, Avinash Sreedasyam, Gerald Tuskan, Daniel Jacobson
Format: Article
Language:English
Published: Frontiers Media S.A. 2019-05-01
Series:Frontiers in Genetics
Subjects:
Populus trichocarpa centromeres
wavelet transform
DNA methylation
SNP density
CENH3
co-evolution
Online Access:https://www.frontiersin.org/article/10.3389/fgene.2019.00487/full

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https://www.frontiersin.org/article/10.3389/fgene.2019.00487/full

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