RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species

RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species

In addition to their common usages to study gene expression, RNA-seq data accumulated over the last 10 years are a yet-unexploited resource of SNPs in numerous individuals from different populations. SNP detection by RNA-seq is particularly interesting for livestock species since whole genome sequen...

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Bibliographic Details
Main Authors: Frédéric Jehl, Fabien Degalez, Maria Bernard, Frédéric Lecerf, Laetitia Lagoutte, Colette Désert, Manon Coulée, Olivier Bouchez, Sophie Leroux, Behnam Abasht, Michèle Tixier-Boichard, Bertrand Bed’hom, Thierry Burlot, David Gourichon, Philippe Bardou, Hervé Acloque, Sylvain Foissac, Sarah Djebali, Elisabetta Giuffra, Tatiana Zerjal, Frédérique Pitel, Christophe Klopp, Sandrine Lagarrigue
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-06-01
Series:Frontiers in Genetics
Subjects:
RNA-seq
SNP calling
genotype calling
SNP annotation
allele-specific expression
livestock
Online Access:https://www.frontiersin.org/articles/10.3389/fgene.2021.655707/full

Internet

https://www.frontiersin.org/articles/10.3389/fgene.2021.655707/full

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