BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation

BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation

Abstract Background RNA sequencing has become an increasingly affordable way to profile gene expression patterns. Here we introduce a workflow implementing several open-source softwares that can be run on a high performance computing environment. Results Developed as a tool by the Bioinformatics Sha...

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Bibliographic Details
Main Authors: Venkat Sundar Gadepalli, Hatice Gulcin Ozer, Ayse Selen Yilmaz, Maciej Pietrzak, Amy Webb
Format: Article
Language:English
Published: BMC 2019-12-01
Series:BMC Bioinformatics
Subjects:
RNAseq
Transcriptome
Workflow
Visualization
Online Access:https://doi.org/10.1186/s12859-019-3251-1

Internet

https://doi.org/10.1186/s12859-019-3251-1

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