BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

Abstract Background Next-generation sequencing allows genome-wide analysis of changes in chromatin states and gene expression. Data analysis of these increasingly used methods either requires multiple analysis steps, or extensive computational time. We sought to develop a tool for rapid quantificati...

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Bibliographic Details
Main Authors: Lorinc S. Pongor, Jacob M. Gross, Roberto Vera Alvarez, Junko Murai, Sang-Min Jang, Hongliang Zhang, Christophe Redon, Haiqing Fu, Shar-Yin Huang, Bhushan Thakur, Adrian Baris, Leonardo Marino-Ramirez, David Landsman, Mirit I. Aladjem, Yves Pommier
Format: Article
Language:English
Published: BMC 2020-04-01
Series:Epigenetics & Chromatin
Subjects:
Histone modifications
Expression
ATAC-seq
ChIP-seq
NS-seq
Replication timing
Online Access:http://link.springer.com/article/10.1186/s13072-020-00343-x

Internet

http://link.springer.com/article/10.1186/s13072-020-00343-x

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